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Mutant Lines
GT17304

GT17304

CSHL Arabidopsis genetrap mutant lines

Phenotypes

Morphological phenotypes

Original description

semi-sterile (unconfirmed)

Anatomical entity /structure development stage	Phenotypes
seed (PO:0009010)	present in fewer numbers in organism (PATO:0001997)

Original: GT17304

Determination of insertion point(s)

Notice

More than one insertion position or no insertion point is expected.

3 prime edge [+] show sequence

Chromosome: 2; Position: 19630840 [Map]; Strand: w
- AT2G47970.1 - [+] show detail - Nuclear pore localisation protein NPL4
  Distance: 0; Region: exon2 (CDS)
- AT2G47970.2 - [+] show detail - Nuclear pore localisation protein NPL4
  Distance: 0; Region: exon1 (3UTR)
- AT2G47980.1 - [+] show detail - sister-chromatid cohesion protein 3
  Distance: -419; Region: promoter

CGTTTTCATC TCCGATGACA CGTGCGGAAA CTGAGCCACA AAGAGAAGCA 
GATGAAAATC TGACATCTTC TTCACCAACG GCAAGCTCTT TGCCCGGTCC 
AGATGTGTTT TTAGAGCCCG CATCGTTGCT CGACTGCTCC GGTTCTCTAT 
TGGGAATGTT GATGACAGAG GCCCCTGATC ACAGCAGCCT AATGTTAAAA 
CACAGGGACC ATTGACGAAA TGCTAATTTT CAATTATCTC ATGGAAAGGC 
AAACACTGAC AAGCTTCATT AACCTAAGAC TTAAAAGCTC CAGATTCAAT 
TACTTTATTT GCCCAAGCAG AGCATTAGTA CAAAGAACAA TGATGATTGA 
TGCAAAGGAA GGGTAGAGAG AAAAACACGA ACCTGGTGAT CCAAGATCCT 
GACGAGAACG AGGAAGAAAT CGTTATCTAC CTCCTTAAGA TCCTTCACAC 
CAACAACCAC CTCCTTCTTC ATCTC

5 prime edge [+] show sequence

Chromosome: 2; Position: 19663029 [Map]; Strand: w
- AT2G48060.1 - [+] show detail - unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biolo...
  Distance: -412; Region: promoter
- AT2G48070.3 - [+] show detail - resistance to phytophthora 1
  Distance: 0; Region: exon1 (CDS)
- AT2G48070.1 - [+] show detail - resistance to phytophthora 1
  Distance: 0; Region: exon1 (CDS)
- AT2G48070.2 - [+] show detail - resistance to phytophthora 1
  Distance: 0; Region: exon1 (CDS)

CCTACTTTCT CCCTGATTAG AACCCAAGGA CGACCCGCCG GAATCTCCTC 
TCCCTTCCTC ATCCTCTGCT CTCGGTAAAG ACTTGAAAAA GGTCCGCCTT 
TTTTCTATAT CATTTACGAT TTTTCTGTTG AAACCATAGG AAGACATGAA 
AATGAAAATG CACCATGTTA GATTGGTCTC TAGTGCTTGA ACCTGTTGAA 
AGAGTTGCTC AAGCTTATGA CTTTTCAATT CAAGCAGGTT GTTAACAAGA 
CTGCTGCAAC CTTTGCCCCT AGAGCTTCCA CCGCCAGTAA AAACCCTGCT 
CTCCCTGGAA CTACTCTTTA CAAAGTTTTT GAGGTTCAAG GCTATGCATC 
GATGTTCCTC GGAGGTGTCC TTTCTTTCAA CCTCCTCTTT CCCTCCAGCG 
AACCTGATTT ATGGAGGTTG ATGGGCATGT GGTCCATTTG GATGTTCAGT 
ATGTCTCCTT CTCTACTTTC TTCTAACTTT ATTTATTCCA AGGCTGCATT 
TTTGCCCCTA ATCCTTTACT TTCTTTCCAG CTATTCCTTC TCTTCGGGCA 
CGAGACTGTC CAAGTAAAGA GAAAGAGGCT CTTAACTACC TCTTTCTCAT 
CGTCCCCTTG CTCAATGTTG CTATTCCCTT CTTTTGGAAA TCATTTGCTC 
TTGTCTGGTC TGCTGACACG GTTGCCTTCT TTGCTATGTA TGCCTGGAAG 
GTATGTCGAA TGGTAATTAT TGAGGGGCGC TTATA

AT2G47970.1

Model type: Protein coding
Short Description: Nuclear pore localisation protein NPL4
Computational Description: Nuclear pore localisation protein NPL4; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: NPL4 (InterPro:IPR007717); BEST Arabidopsis thaliana protein match is: NPL4-like protein 1 (TAIR:AT3G63000.1); Has 392 Blast hits to 392 proteins in 178 species: Archae - 0; Bacteria - 0; Metazoa - 132; Fungi - 106; Plants - 67; Viruses - 0; Other Eukaryotes - 87 (source: NCBI BLink).
Link: InterPro Scan - TAIR

AT2G47970.2

Model type: Protein coding
Short Description: Nuclear pore localisation protein NPL4
Computational Description: Nuclear pore localisation protein NPL4; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: NPL4 (InterPro:IPR007717); BEST Arabidopsis thaliana protein match is: NPL4-like protein 1 (TAIR:AT3G63000.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).
Link: InterPro Scan - TAIR

AT2G47980.1

Model type: Protein coding
Short Description: sister-chromatid cohesion protein 3
Curator Summary: Essential to the monopolar orientation of the kinetochores during meiosis.
Computational Description: sister-chromatid cohesion protein 3 (SCC3); FUNCTIONS IN: binding; INVOLVED IN: mitosis, attachment of spindle microtubules to kinetochore involved in homologous chromosome segregation, meiotic sister chromatid cohesion, centromeric; LOCATED IN: chromosome, nucleus; EXPRESSED IN: 26 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Armadillo-type fold (InterPro:IPR016024), STAG (InterPro:IPR013721), Stromalin conservative domain (InterPro:IPR020839); Has 568 Blast hits to 559 proteins in 184 species: Archae - 0; Bacteria - 2; Metazoa - 324; Fungi - 134; Plants - 52; Viruses - 0; Other Eukaryotes - 56 (source: NCBI BLink).
Link: InterPro Scan - TAIR

AT2G48060.1

Model type: Protein coding
Computational Description: unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: shoot, sperm cell; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF3595 (InterPro:IPR021999); Has 533 Blast hits to 341 proteins in 95 species: Archae - 2; Bacteria - 15; Metazoa - 318; Fungi - 0; Plants - 93; Viruses - 0; Other Eukaryotes - 105 (source: NCBI BLink).
Link: InterPro Scan - TAIR

AT2G48070.1

Model type: Protein coding
Short Description: resistance to phytophthora 1
Curator Summary: Encodes a chloroplast protein RPH1 (resistance to Phytophthora 1). Involved in immune response to Phytophthora brassicae. rph1 mutant plants (in Ws background) are susceptible to P. brassicae.
Computational Description: RESISTANCE TO PHYTOPHTHORA 1 (RPH1); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: defense response to oomycetes, positive regulation of hydrogen peroxide biosynthetic process; LOCATED IN: chloroplast, plastid; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; Has 47 Blast hits to 47 proteins in 22 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 41; Viruses - 0; Other Eukaryotes - 6 (source: NCBI BLink).
Link: InterPro Scan - TAIR

AT2G48070.2

Model type: Protein coding
Short Description: resistance to phytophthora 1
Curator Summary: Encodes a chloroplast protein RPH1 (resistance to Phytophthora 1). Involved in immune response to Phytophthora brassicae. rph1 mutant plants (in Ws background) are susceptible to P. brassicae.
Computational Description: RESISTANCE TO PHYTOPHTHORA 1 (RPH1); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: defense response to oomycetes, positive regulation of hydrogen peroxide biosynthetic process; LOCATED IN: chloroplast, plastid; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; Has 47 Blast hits to 47 proteins in 22 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 41; Viruses - 0; Other Eukaryotes - 6 (source: NCBI BLink).
Link: InterPro Scan - TAIR

AT2G48070.3

Model type: Protein coding
Short Description: resistance to phytophthora 1
Curator Summary: Encodes a chloroplast protein RPH1 (resistance to Phytophthora 1). Involved in immune response to Phytophthora brassicae. rph1 mutant plants (in Ws background) are susceptible to P. brassicae.
Computational Description: RESISTANCE TO PHYTOPHTHORA 1 (RPH1); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: defense response to oomycetes, positive regulation of hydrogen peroxide biosynthetic process; LOCATED IN: plastid; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages.
Link: InterPro Scan - TAIR