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GT17305

CSHL Arabidopsis genetrap mutant lines

Original: GT17305

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Original: GT17305

Determination of insertion point(s)

Notice

More than one insertion position or no insertion point is expected.

  • 3 prime edge [+] show sequence

    1. Chromosome: 4; Position: 601431 [Map]; Strand: w
      • AT4G01440.1 - [+] show detail - nodulin MtN21 /EamA-like transporter family protein
        Distance: 2713; Region: intergenic
      • AT4G01450.1 - [+] show detail - nodulin MtN21 /EamA-like transporter family protein
        Distance: -7023; Region: intergenic
    Flanking Genome Sequence: GT17305 - 3-prime edge 
    ATGAAACGGT AGAGGTATGT TACCGACCGT TACCGACCGT TTTCATCCCT 
    ATTTGTAATG TAACGACACA CGCCATTATA TATACTTAAC AATTTTCTCG 
    ACTTGCATGT ACACCAGTGA GTGAGAGTCT TATATTATAT TGTTAATCTT 
    TGTTTGGATC CAAAATATTT TTGAAGTGCT TTCACTCGTG TGTGTGCCAT 
    TCCTCCGCAC TCAGCAGTAT TGTAAAGAAA AAGCCAATCA ATACCAACTT 
    CTTTTTTTGC TACAATAATT TATAATAATA AAGAGTTTAA ACGAGTCTGA 
    ATATAAAAGA AAATAAAGAA AGACTTTAAT AAAGTATAAA TTTACATTAT 
    GAAAATAAAA TAAAGGGAGA AGAAGGATAA GGCATTGAGG CTAGCAGCCT 
    ATAAGTGCCT TTAAAGAAAA ACTATTGTTT GTTTTTTTCT CTTAAATCAA 
    TACTTTATTT ATTTTCTCTC TTCTCCCCCA AAGAGAAGCA TTGTTTTAAG 
    CTTACAACAG ATGAGATATA ATTGCTATGA AGTGTGACAA TTGTTCTAAA 
    TAGTGGATCA AATAAGTAGA AATATAAATA ATGAAACTTT GGTGAAGCAG 
    ATATTGTTGA TTGAATCTTG TTAATGAGGT TTGGGATACT TTAGAAAAAA 
    CATTGTTTGA TTTATTCTGC AAGGATTTCA GGAAATATTT CAGATTTCAG 
    ATAATTAATA ACGTCTGAAA ATGATATTCA TTAAAAAACA TTCGACAAAT 
    ATTTCAGCTA CACGACAAAT TGGGACCAGC TCATCGCACT GCTTCACAAC 
    ACAAGCACTC CTTAACTCAA TC

  • 5 prime edge [+] show sequence

    1. Chromosome: 2; Position: 19663028 [Map]; Strand: w
      • AT2G48060.1 - [+] show detail - unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biolo...
        Distance: -411; Region: promoter
      • AT2G48070.3 - [+] show detail - resistance to phytophthora 1
        Distance: 0; Region: exon1 (CDS)
      • AT2G48070.1 - [+] show detail - resistance to phytophthora 1
        Distance: 0; Region: exon1 (CDS)
      • AT2G48070.2 - [+] show detail - resistance to phytophthora 1
        Distance: 0; Region: exon1 (CDS)
    Flanking Genome Sequence: GT17305 - 5-prime edge 
    TCCTACTTTC TCCCTGATTA GAACCCAAGG ACGACCCGCC GGAATCTCCT 
    CTCCCTTCCT CATCCTCTGC TCTCGGTAAA GACTTGAAAA AGGTCCGCCT 
    TTTTTCTATA TCATTTACGA TTTTTCTGTT GAAACCATAG GAAGACATGA 
    AAATGAAAAT GCACCATGTT AGATTGGTCT CTAGTGCTTG AACCTGTTGA 
    AAGAGTTGCT CAAGCTTATG ACTTTTCAAT TCAAGCAGGT TGTTAACAAG 
    ACTGCTGCAA CCTTTGCCCC TAGAGCTTCC ACCGCCAGTA AAAACCCTGC 
    TCTCCCTGGA ACTACTCTTT ACAAAGTTTT TGAGGTTCAA GGCTATGCAT 
    CGATGTTCCT CGGAGGTGTC CTTTCTTTCA ACCTCCTCTT TCCCTCCAGC 
    GAACCTGATT TATGGAGGTT GATGGGCATG TGGTCCATTT GGATGTTCAG 
    AATGTCTCCT TCTCTACTTT CTTCTAACTT TAT

AT2G48060.1

Model type
Protein coding
Computational Description
unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: shoot, sperm cell; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF3595 (InterPro:IPR021999); Has 533 Blast hits to 341 proteins in 95 species: Archae - 2; Bacteria - 15; Metazoa - 318; Fungi - 0; Plants - 93; Viruses - 0; Other Eukaryotes - 105 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT2G48070.1

Model type
Protein coding
Short Description
resistance to phytophthora 1
Curator Summary
Encodes a chloroplast protein RPH1 (resistance to Phytophthora 1). Involved in immune response to Phytophthora brassicae. rph1 mutant plants (in Ws background) are susceptible to P. brassicae.
Computational Description
RESISTANCE TO PHYTOPHTHORA 1 (RPH1); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: defense response to oomycetes, positive regulation of hydrogen peroxide biosynthetic process; LOCATED IN: chloroplast, plastid; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; Has 47 Blast hits to 47 proteins in 22 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 41; Viruses - 0; Other Eukaryotes - 6 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT2G48070.2

Model type
Protein coding
Short Description
resistance to phytophthora 1
Curator Summary
Encodes a chloroplast protein RPH1 (resistance to Phytophthora 1). Involved in immune response to Phytophthora brassicae. rph1 mutant plants (in Ws background) are susceptible to P. brassicae.
Computational Description
RESISTANCE TO PHYTOPHTHORA 1 (RPH1); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: defense response to oomycetes, positive regulation of hydrogen peroxide biosynthetic process; LOCATED IN: chloroplast, plastid; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; Has 47 Blast hits to 47 proteins in 22 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 41; Viruses - 0; Other Eukaryotes - 6 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT2G48070.3

Model type
Protein coding
Short Description
resistance to phytophthora 1
Curator Summary
Encodes a chloroplast protein RPH1 (resistance to Phytophthora 1). Involved in immune response to Phytophthora brassicae. rph1 mutant plants (in Ws background) are susceptible to P. brassicae.
Computational Description
RESISTANCE TO PHYTOPHTHORA 1 (RPH1); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: defense response to oomycetes, positive regulation of hydrogen peroxide biosynthetic process; LOCATED IN: plastid; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages.
Link
InterPro Scan - TAIR

AT4G01440.1

Model type
Protein coding
Short Description
nodulin MtN21 /EamA-like transporter family protein
Computational Description
nodulin MtN21 /EamA-like transporter family protein; LOCATED IN: endomembrane system, membrane; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF6, transmembrane (InterPro:IPR000620); BEST Arabidopsis thaliana protein match is: nodulin MtN21 /EamA-like transporter family protein (TAIR:AT4G01450.2); Has 3147 Blast hits to 3133 proteins in 491 species: Archae - 24; Bacteria - 1505; Metazoa - 6; Fungi - 0; Plants - 1206; Viruses - 0; Other Eukaryotes - 406 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT4G01450.1

Model type
Protein coding
Short Description
nodulin MtN21 /EamA-like transporter family protein
Computational Description
nodulin MtN21 /EamA-like transporter family protein; LOCATED IN: endomembrane system, membrane; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 11 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF6, transmembrane (InterPro:IPR000620); BEST Arabidopsis thaliana protein match is: nodulin MtN21 /EamA-like transporter family protein (TAIR:AT4G01440.1); Has 2097 Blast hits to 2086 proteins in 318 species: Archae - 4; Bacteria - 822; Metazoa - 4; Fungi - 0; Plants - 1178; Viruses - 0; Other Eukaryotes - 89 (source: NCBI BLink).
Link
InterPro Scan - TAIR