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GT17319

CSHL Arabidopsis genetrap mutant lines

Original: GT17319

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Original: GT17319

Determination of insertion point(s)

  • 3 prime edge [+] show sequence

    1. Chromosome: 2; Position: 19554250 [Map]; Strand: w
      • AT2G47700.1 - [+] show detail - RING/U-box superfamily protein
        Distance: 0; Region: exon1 (CDS)
    Flanking Genome Sequence: GT17319 - 3-prime edge 
    CGGTAGAGGT ATTTTACCGA CCGTTACCGA CCGTTTTCAT CCCTACTCCT 
    GTCGAAGTCT CGTGCTCGAT TTGCCTCGAA TCGGTGCTCG ATGATGGTAC 
    CAGATCCAAG GCTAAGCTCC AATGTGGTCA CCAATTCCAT TTGGGTATTT 
    CATTCCCTTC CTCCATCTCT TACCATTTTG CGTTTCCTCC ATCACAGTTT 
    GATGATCCGA TGGCTTTTTG CTTGTACAAG CTTTTGTGCA ATTATCTGAT 
    GGTAGATTTG GACGATAATT GAATGAATTT GAGAATATAG ATGGATTCCT 
    AATCCCTTGC TTTGTTTACA AGCTTAGATT GCTCCAGTTG GTAGATCCTA 
    GAAATGATGT CTGTATGACT GTATCCAGTT CTGACAAATG TGTCTAGTAA 
    CATGTGAATC GGTTTCTCTC ACTTTCGACG ATAGAGAATG AGGTTTGCTA 
    GTTCTATTAT CTGGCTGCTG AATTTGTTGC TATTTTCGGC TTTCCCTTTA 
    GCAGCTTGTT TTTTGGTTTC TTGCAGATTG CATTGGATCA GCATTTAACA 
    TGAAAGGAGC CATGCAATGC CCTAACTGTC GCAATGTCGA AAAGGGTCAG 
    TGGTTGTATG CAAACGGTTC TACTCGCCCC TTTCCAGAGT TTTCCATGGA 
    AGATTGGATC CCTGAAGAAG ACTTGTACGG TTTAAGCTAT CCGGAAATGG 
    TAAAAGCTCA CTACTTTGTG CAACGATATG CTTTCTTTTC GTGTACATG

  • 5 prime edge [+] show sequence

    1. Chromosome: 2; Position: 19554300 [Map]; Strand: w
      • AT2G47700.1 - [+] show detail - RING/U-box superfamily protein
        Distance: 0; Region: exon1 (CDS)
    Flanking Genome Sequence: GT17319 - 5-prime edge 
    TTCCATCCTA CTTTCTCCCT GGACAGGAGA CGAGGAATCC TCCGGGTTCC 
    CGCGTTTTCC AGGGTCACAT CCACCAGCAA TTCGGAGATC ATCATCGCAA 
    CCCGAATCTT TAGCTCCGGC CATATCTTCA CCAGCAGGCC AAATCGGAGG 
    GAACCAACGA AAATTTTCGT TTTTCGAAAG AACAAAAAAA AAGAAAAGAA 
    AGGATTGTCA AACAAAAATC AATGAGAAAC CATGTCTCGC TATCGCTATC 
    TGTCTCTCTC TTTCTCTCCG AGTTCGTCTG CCTTTTGGAA CGCCGATGCG 
    GTAATAATCT TACTCCCAAA TAAATCTATC CTTCCTCTT

AT2G47700.1

Model type
Protein coding
Short Description
RING/U-box superfamily protein
Computational Description
RED AND FAR-RED INSENSITIVE 2 (RFI2); CONTAINS InterPro DOMAIN/s: Zinc finger, RING-type (InterPro:IPR001841), Zinc finger, C3HC4 RING-type (InterPro:IPR018957); BEST Arabidopsis thaliana protein match is: RING/U-box superfamily protein (TAIR:AT3G05545.1); Has 457 Blast hits to 456 proteins in 77 species: Archae - 0; Bacteria - 0; Metazoa - 168; Fungi - 17; Plants - 198; Viruses - 0; Other Eukaryotes - 74 (source: NCBI BLink).
Link
InterPro Scan - TAIR