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GT17325

CSHL Arabidopsis genetrap mutant lines

Original: GT17325

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Original: GT17325

Determination of insertion point(s)

Notice

More than one insertion position or no insertion point is expected.

  • 3 prime edge [+] show sequence

    1. Chromosome: 5; Position: 1928723 [Map]; Strand: c
      • AT5G06310.1 - [+] show detail - Nucleic acid-binding, OB-fold-like protein
        Distance: 0; Region: exon2 (CDS)
    Flanking Genome Sequence: GT17325 - 3-prime edge 
    ACGGTAGAGG TTTTTACCGA CCGTTACCGA CCGTTTTCAT CCCTAGTATT 
    CGGGATCTGG CCTTCCCGTT AAGTTCATCT CACTCGACAC ATCGAGACCT 
    TCCTCGTGTT GAATCGATCG GAGATATCAT CTTACTTTCA CGTGTAAAGG 
    TTGACACACT ATTCCTCTGA TATGAGAAGA TCAATTCTTC GTGGCTTTTG 
    CTGATTTTGT TGTTAAACAG TTTTCTTCTG GGTTTAAACT CAGATTGTGC 
    TGATTAACCG GAAAATCACA GCTCTCTGCA ATGAAACAAC CTCTTCGTCT 
    TTTGCTTTAT TCAATGGGAA ACATAGCGTG GATTCTATAC CTTACCAGTC 
    CTCACCTAAA TTCCTGATGA GAGAACAGGA TAAGAACTTC TTATCGAATC 
    TGAGAGAATG GATGATCACG TACAAGTTTG AAGATGGTAA TTATGATGCA 
    ATATCATTTC TAATGAATTC TACTTATTCA CTGAAATCTC TATATGCAAA 
    TGTTTGCTTC GTACTTTATC TCTAATGTGT TCTATGTCTT GGTGGTAAGT 
    TGCGATTGTT GTGAGGTTTT GTTTTGTTTT GTTTTATGAT AGGGTCATGC 
    TGTTTCACAT CCCTGAAAGA TATCAAAGAA GGCGAATGTT CAAACCTATC 
    TTGCCAGGTA GATTGATCAT TCCTTAAAAG AATATGTTTT GGTTTTACTT 
    TTCATGTTCA TTTGTATTTA TGGAACTGTA AGTGTCTTTT ATGGTCTGCT 
    ATGTCTTTGA CATTGTTTCT CATTGTTTGT TTCCTTTGA

  • 5 prime edge [+] show sequence

    1. Chromosome: 2; Position: 14072552 [Map]; Strand: c
      • AT2G33205.1 - [+] show detail - Serinc-domain containing serine and sphingolipid biosynthesis protein
        Distance: 0; Region: intron3 (CDS)
    Flanking Genome Sequence: GT17325 - 5-prime edge 
    CTTTCTCCCT GCTTCTTTCT TCTACCTCAG CTTTACATCC AAATTTATGG 
    TATGCTTCTG TCTCACTATA ACTCTATAAT ATTCTCCATT TTATCTAATT 
    GGTTTGGATC ACGACAATGA TGTTTTCCTT ACAGGAGAAA TCGCTCGTGT 
    TGGTGCAGGG TAAAATCATC TTTCAAGTTA TACTCTTCTT ATAAGATAAG 
    AGAATAAGAG AAACACATAA TTCTCTTACC ATTTCTATTG TTTCAGGATA 
    TTTCTTGGTC TGCAACTTTG TAAGTGTTAT CGAATTCATC ACTTGGTGGA 
    ATAACTATTG GATGCCTCAA AACCAAAGTA AGCAAAGGTA AGCAAGTATC 
    AGTCATTACA AAAGCGTTTT CTCTATGTGG ATATATCACC AATTGGCTAA 
    CACTACTGTG TTTTCTGCAG CTGTTCTTTT GGTTTGGTCA TGTCAATAGT 
    TTTCTACATC GGTTCTGTTT GCGGGATCGC AGTGATGTAC TACTTTTATG 
    GAGCTTCTAC TGCTTGTGGC CTC

AT2G33205.1

Model type
Protein coding
Short Description
Serinc-domain containing serine and sphingolipid biosynthesis protein
Computational Description
Serinc-domain containing serine and sphingolipid biosynthesis protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: membrane; CONTAINS InterPro DOMAIN/s: TMS membrane protein/tumour differentially expressed protein (InterPro:IPR005016); BEST Arabidopsis thaliana protein match is: Serinc-domain containing serine and sphingolipid biosynthesis protein (TAIR:AT3G24460.1); Has 814 Blast hits to 786 proteins in 182 species: Archae - 0; Bacteria - 0; Metazoa - 443; Fungi - 138; Plants - 166; Viruses - 0; Other Eukaryotes - 67 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT5G06310.1

Model type
Protein coding
Short Description
Nucleic acid-binding, OB-fold-like protein
Curator Summary
Encodes AtPOT1b. Note on nomenclature: different names have been given to Arabidopsis POT-like genes (Kuchar and Fajkus, 2004; Shakirov et al, 2005; Tani and Murata, 2005). According to a unifying nomenclature (Surovtseva et al, 2007), At2g05210 (previously named AtPOT1) is designated AtPOT1a, while At5g06310 (previously named AtPOT2) is designated AtPOT1b.
Computational Description
protection of telomeres 1b (AtPOT1b); FUNCTIONS IN: DNA binding; INVOLVED IN: telomere maintenance; LOCATED IN: nuclear chromosome, telomeric region; CONTAINS InterPro DOMAIN/s: Nucleic acid-binding, OB-fold-like (InterPro:IPR016027), Nucleic acid-binding, OB-fold (InterPro:IPR012340), Telomere end binding protein (InterPro:IPR011564); BEST Arabidopsis thaliana protein match is: Nucleic acid-binding, OB-fold-like protein (TAIR:AT2G05210.3); Has 198 Blast hits to 197 proteins in 63 species: Archae - 0; Bacteria - 0; Metazoa - 81; Fungi - 0; Plants - 83; Viruses - 0; Other Eukaryotes - 34 (source: NCBI BLink).
Link
InterPro Scan - TAIR