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GT17326

CSHL Arabidopsis genetrap mutant lines

Original: GT17326

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Original: GT17326

Determination of insertion point(s)

  • 3 prime edge [+] show sequence

    Not mapped

    Flanking Genome Sequence: GT17326 - 3-prime edge
    GTAGAGGTTT TTACCGACCG TTACCGACCG TTTTCATCCC TACACAGAAG 
    CTACCTTG
  • 3 prime edge [+] show sequence

    Not mapped

    Flanking Genome Sequence: GT17326 - 3-prime edge
    GGCGTGGGGG GGGGGGGGGG GG
  • 3 prime edge [+] show sequence

    Not mapped

    Flanking Genome Sequence: GT17326 - 3-prime edge
    CGGTAGAGGT ATTTTACCGA CCGTTACCGA CCGTTTTCAT CCCTACAAAC 
    AAGCTAC
  • 5 prime edge [+] show sequence

    1. Chromosome: 2; Position: 14072488 [Map]; Strand: c
      • AT2G33205.1 - [+] show detail - Serinc-domain containing serine and sphingolipid biosynthesis protein
        Distance: 0; Region: exon4 (CDS)
    Flanking Genome Sequence: GT17326 - 5-prime edge
    CACTATAACT CTATAATATT CTCCATTTTA TCTAATTGGT TACGATCACG 
    ACAATGATGT TTTCCTTACA AGAGAAATCG CTCATGTTGG TGCAGGGGGA
    AATCATCTTT CAAGTTATAC TCTTCTTATA AGAGAGCAGA ATAAGAGAAA
    CGCATAATTC TC

AT2G33205.1

Model type
Protein coding
Short Description
Serinc-domain containing serine and sphingolipid biosynthesis protein
Computational Description
Serinc-domain containing serine and sphingolipid biosynthesis protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: membrane; CONTAINS InterPro DOMAIN/s: TMS membrane protein/tumour differentially expressed protein (InterPro:IPR005016); BEST Arabidopsis thaliana protein match is: Serinc-domain containing serine and sphingolipid biosynthesis protein (TAIR:AT3G24460.1); Has 814 Blast hits to 786 proteins in 182 species: Archae - 0; Bacteria - 0; Metazoa - 443; Fungi - 138; Plants - 166; Viruses - 0; Other Eukaryotes - 67 (source: NCBI BLink).
Link
InterPro Scan - TAIR