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GT17329

CSHL Arabidopsis genetrap mutant lines

Original: GT17329

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Original: GT17329

Determination of insertion point(s)

  • 3 prime edge [+] show sequence

    Not mapped

    Flanking Genome Sequence: GT17329 - 3-prime edge 
    ATCCCTACCC AAATCCCTCG ACAATAAACC CTAGA

  • 3 prime edge [+] show sequence

    1. Chromosome: 2; Position: 19630871 [Map]; Strand: w
      • AT2G47970.1 - [+] show detail - Nuclear pore localisation protein NPL4
        Distance: 0; Region: exon2 (CDS)
      • AT2G47970.2 - [+] show detail - Nuclear pore localisation protein NPL4
        Distance: 0; Region: exon1 (3UTR)
      • AT2G47980.1 - [+] show detail - sister-chromatid cohesion protein 3
        Distance: -388; Region: promoter
    Flanking Genome Sequence: GT17329 - 3-prime edge 
    CGGTAGAGGT ATTTTACCGA CCGTTACCGA CCGTTTTCAT CTCCGATGAC 
    ACGTCCAGAA ACTGAGCCAC AAAGAGAAGC ATATGAAAAT CTGACATCTT 
    CTTCACCAAC GGCAAGCTCT TTGCCCGGTC CAGATGTGTT TTTAGAGCCC 
    GCATCGTTGC TCGACTGCTC CGGTTCTCTA TTGGGAATGT TGATGACAGA 
    GGCCCCTGAT CACAGCAGCC TAATGTTAAA ACACAGGGAC CATTGACGAA 
    ATGCTAATTT TCAATTATCT CATGGAAAGC AAACACTGAC AAGTTTCATT 
    AACCTAAGAC TTAAAAGCTC CAGATTCAAT TACTTTATTT GCCCAAGCAG 
    AGCATTAGTA CAAAGAACAA TGATGATTGA TGCAAAGGAA GGGTAGAGAG 
    AAAAACACGA ACCTGGTGAT CCAAGATCCT GACGAGAACG AGGAAGAAAT 
    CGTTATCTAC CTCCTTAAGA TCCTTCACAC CAACAACCAC CTCCT

AT2G47970.1

Model type
Protein coding
Short Description
Nuclear pore localisation protein NPL4
Computational Description
Nuclear pore localisation protein NPL4; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: NPL4 (InterPro:IPR007717); BEST Arabidopsis thaliana protein match is: NPL4-like protein 1 (TAIR:AT3G63000.1); Has 392 Blast hits to 392 proteins in 178 species: Archae - 0; Bacteria - 0; Metazoa - 132; Fungi - 106; Plants - 67; Viruses - 0; Other Eukaryotes - 87 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT2G47970.2

Model type
Protein coding
Short Description
Nuclear pore localisation protein NPL4
Computational Description
Nuclear pore localisation protein NPL4; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: NPL4 (InterPro:IPR007717); BEST Arabidopsis thaliana protein match is: NPL4-like protein 1 (TAIR:AT3G63000.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT2G47980.1

Model type
Protein coding
Short Description
sister-chromatid cohesion protein 3
Curator Summary
Essential to the monopolar orientation of the kinetochores during meiosis.
Computational Description
sister-chromatid cohesion protein 3 (SCC3); FUNCTIONS IN: binding; INVOLVED IN: mitosis, attachment of spindle microtubules to kinetochore involved in homologous chromosome segregation, meiotic sister chromatid cohesion, centromeric; LOCATED IN: chromosome, nucleus; EXPRESSED IN: 26 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Armadillo-type fold (InterPro:IPR016024), STAG (InterPro:IPR013721), Stromalin conservative domain (InterPro:IPR020839); Has 568 Blast hits to 559 proteins in 184 species: Archae - 0; Bacteria - 2; Metazoa - 324; Fungi - 134; Plants - 52; Viruses - 0; Other Eukaryotes - 56 (source: NCBI BLink).
Link
InterPro Scan - TAIR