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GT17331

CSHL Arabidopsis genetrap mutant lines

Original: GT17331

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Original: GT17331

Determination of insertion point(s)

  • 3 prime edge [+] show sequence

    1. Chromosome: 1; Position: 30131974 [Map]; Strand: c
      • AT1G80090.1 - [+] show detail - Cystathionine beta-synthase (CBS) family protein
        Distance: 34; Region: intergenic
      • AT1G80100.1 - [+] show detail - histidine phosphotransfer protein 6
        Distance: -1752; Region: intergenic
    Flanking Genome Sequence: GT17331 - 3-prime edge 
    TTTACCGACC GTTACCGACC GTTTTCATCC CATTCATATC GAATGTTAAC 
    ATCACATTTA CGTAACACAT AAGAAAAATA TAGGGAAATG ATATAAATAG 
    AAAAAATGTC AAAGCAAAGG AATGACGAAT TTCTACCAAA AGAATATCTT 
    ATAAACACAA ATAAACATGT TAACAAAATT GCACATGGAA TAATCCCATT 
    AAGGAAAAAA TATTGTACAT GGATAATAAA AGAAAACAAA GCAATCATAG 
    AAATTATGAA ATACTGAGAG GGTAGTGATT AATGAATAGG GTACTCGAGC 
    ACGGGGCGCA AAGAAGCATG ACATACGAAT GAGACAATTT CAGTTTTCGT 
    ATATAATAAT TCCATAATCA TAATTTAATC ACTAGTTTTA ATTGGTAACA 
    TAACCTTAAA AAAGCATCCA CTCATTATGC GCTCCACTTT ACTACTTACT 
    CTGATAACAT GAAAAAGTAT ATGTTTAATA CTAGCTAGTT GTTTGTTCCG 
    TTTCCAAGCA CGCTC

  • 5 prime edge [+] show sequence

    1. Chromosome: 1; Position: 30131866 [Map]; Strand: c
      • AT1G80090.1 - [+] show detail - Cystathionine beta-synthase (CBS) family protein
        Distance: 0; Region: exon5 (3UTR)
    Flanking Genome Sequence: GT17331 - 5-prime edge 
    AAACGCAAAA TTGTGTGGAT TTTCTCTAAG AAACAAATAA AAGAAAATTT 
    GAGTAATTGG AGAGAAGACT GAAAGTTGCG AGTTAAAACA GATCCGGAGC 
    TCCGGAAAGC AAAGCGGATC GGACCACAGC GATGATGTCA GTAAGAGAAA 
    CAAGGCCTTG TAGCCCACCG TTCTGGTCCA CGACCCAAAC TCTGTGTACA 
    CGTTTCGTGG TGACCATATG GATCACCTGG GCCAAGGTTG ATGTCACGTG 
    ACACGTCACG AGCTCCCTCC CTGGTGTTGA GGTAGCAGCG GTGAACAAGA 
    GAGTTCTTGG GATTTTCTCG ACGAACTCTA GTGCATTTAG CGGCAACCAC 
    GAACGCAATG TGGCTAAATG ACATCCCTTC A

AT1G80090.1

Model type
Protein coding
Short Description
Cystathionine beta-synthase (CBS) family protein
Computational Description
Cystathionine beta-synthase (CBS) family protein; CONTAINS InterPro DOMAIN/s: Cystathionine beta-synthase, core (InterPro:IPR000644); BEST Arabidopsis thaliana protein match is: Cystathionine beta-synthase (CBS) protein (TAIR:AT1G15330.1); Has 517 Blast hits to 517 proteins in 144 species: Archae - 0; Bacteria - 47; Metazoa - 83; Fungi - 146; Plants - 195; Viruses - 0; Other Eukaryotes - 46 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT1G80100.1

Model type
Protein coding
Short Description
histidine phosphotransfer protein 6
Curator Summary
AHP6 lacks the conserved histidine residue (Asn83 in AHP6b), which is required for phosphotransfer, present in the other AHPs. AHP6 does not appear to have phosphotransfer activity. Acts as an inhibitor of cytokinin signaling by interacting with the phosphorelay machinery. Expressed in developing protoxylem and associated pericycle cell files. Negative regulator of cytokinin signaling. Expression is down-regulated by cytokinins. There are two alternatively spliced genes for this locus, AHP6a and AHP6b, differing in the length of the first exon. In ahp6-2 seedlings, only the AHP6a transcript is present. Members of the AHP gene family include: AT3G21510 (AHP1), AT3G29350 (AHP2), AT5G39340 (AHP3), AT3G16360 (AHP4), AT1G03430 (AHP5) and AT1G80100 (AHP6).
Computational Description
histidine phosphotransfer protein 6 (HP6); CONTAINS InterPro DOMAIN/s: Signal transduction histidine kinase, phosphotransfer (Hpt) domain (InterPro:IPR008207); BEST Arabidopsis thaliana protein match is: histidine-containing phosphotransfer factor 5 (TAIR:AT1G03430.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Link
InterPro Scan - TAIR