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GT17332

CSHL Arabidopsis genetrap mutant lines

Original: GT17332

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Original: GT17332

Determination of insertion point(s)

Notice

More than one insertion position or no insertion point is expected.

  • 3 prime edge [+] show sequence

    1. Chromosome: 1; Position: 26644014 [Map]; Strand: c
      • AT1G70670.1 - [+] show detail - Caleosin-related family protein
        Distance: -568; Region: promoter
    Flanking Genome Sequence: GT17332 - 3-prime edge 
    GTAGAGGTAT TTTACCGACC GTTACCGACC GTTTTCATCC CTAATTTTTA 
    GTGCGTAGGC TTTAAAATAG ATATAGAAAG CGACTATAAA CAATACGAAG 
    ACACATGTGG CATATACACC CACTAATACC CATATCTTTC TTTTCTTTTC 
    TAAAATGGAT TTCATTTTAA TTTCTCTTTC AAAAAGCACT TTATTGAGCC 
    ATGAATTTAA TATACATTAC TTCGTTAATC TCCTTTGCCG AGAAGTAATG 
    TATATCACTA TTATTTTGTA TAAAACCCGG TCATTAATTC TCAATATATT 
    CATATTTAAA GTGTTAAACT AAATAACCTT CTCAGGCTTA TACCATATAT 
    GTACTAAGTC TTAGGTAACG ACTTATTAAT TAAATACCGC AAGTCGGCAA 
    TGCGAAACGA TCCAAATTAT GCCATTTTTA ACTAATAGAA ACCCCTGAAA 
    AATTACCAGT TGTATATTAA ATTACTGATA CGTTAAAATT AAATTTTACG 
    A

  • 5 prime edge [+] show sequence

    1. Chromosome: 1; Position: 26643348 [Map]; Strand: c
      • AT1G70660.1 - [+] show detail - MMS ZWEI homologue 2
        Distance: 1199; Region: intergenic
      • AT1G70670.1 - [+] show detail - Caleosin-related family protein
        Distance: -1234; Region: intergenic
    Flanking Genome Sequence: GT17332 - 5-prime edge 
    CATGAAAGAT AAAAATTTAA AATTTTCCCA TATATTATCA AAGAAAAACT 
    TTGGAAGT

  • 5 prime edge [+] show sequence

    1. Chromosome: 2; Position: 14072269 [Map]; Strand: c
      • AT2G33205.1 - [+] show detail - Serinc-domain containing serine and sphingolipid biosynthesis protein
        Distance: 0; Region: intron5 (CDS)
    Flanking Genome Sequence: GT17332 - 5-prime edge 
    ATTCATCACT TGGTGGAATA ACTATTGGAT GCCTCAAAAC CAAAGTAAGC 
    AAAGGGAAGC AAGTTTCATT CATTACAAAA GCGTTTTCTC TAAGTGGATA 
    TATCACCAAT TGGCTAACAC TACTGTGTTC TCTGCAGCTG ACCTTTAGGT 
    TTGGTCATGA CAATAGCCTT CTACATCGGA TCTGTTTGCG GGATCGCAGT 
    GATGTACTAC TTTTATGGAA CTTCTACTGC TT

AT1G70660.1

Model type
Protein coding
Short Description
MMS ZWEI homologue 2
Curator Summary
MMZ2/UEV1B encodes a protein that may play a role in DNA damage responses and error-free post-replicative DNA repair by participating in lysine-63-based polyubiquitination reactions. UEV1A can form diubiquitin and triubiquitin chains in combination with UBC13A/UBC35 in vitro. It can also functionally complement an mms2 mutation in budding yeast, both by increasing mms2 mutant viability in the presence of the DNA damaging agent MMS, and by reducing the rate of spontaneous DNA mutation. However, a combination of MMZ2/UEV1B and UBC13A do not do a good job of rescuing an mms2 ubc13 double mutant in yeast. MMZ2/UEV1B transcripts are found in most plant organs, but not in the pollen or in seedlings 6 hours or 2 days post-germination. The transcript levels do not appear to be stress-inducible.
Computational Description
MMS ZWEI homologue 2 (MMZ2); CONTAINS InterPro DOMAIN/s: Ubiquitin-conjugating enzyme/RWD-like (InterPro:IPR016135), Ubiquitin-conjugating enzyme, E2 (InterPro:IPR000608); BEST Arabidopsis thaliana protein match is: Ran BP2/NZF zinc finger-like superfamily protein (TAIR:AT1G70650.2); Has 3691 Blast hits to 3691 proteins in 297 species: Archae - 0; Bacteria - 0; Metazoa - 1966; Fungi - 516; Plants - 688; Viruses - 0; Other Eukaryotes - 521 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT1G70670.1

Model type
Protein coding
Short Description
Caleosin-related family protein
Computational Description
Caleosin-related family protein; CONTAINS InterPro DOMAIN/s: Caleosin related (InterPro:IPR007736); BEST Arabidopsis thaliana protein match is: Caleosin-related family protein (TAIR:AT1G70680.1); Has 341 Blast hits to 336 proteins in 61 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 60; Plants - 278; Viruses - 0; Other Eukaryotes - 3 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT2G33205.1

Model type
Protein coding
Short Description
Serinc-domain containing serine and sphingolipid biosynthesis protein
Computational Description
Serinc-domain containing serine and sphingolipid biosynthesis protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: membrane; CONTAINS InterPro DOMAIN/s: TMS membrane protein/tumour differentially expressed protein (InterPro:IPR005016); BEST Arabidopsis thaliana protein match is: Serinc-domain containing serine and sphingolipid biosynthesis protein (TAIR:AT3G24460.1); Has 814 Blast hits to 786 proteins in 182 species: Archae - 0; Bacteria - 0; Metazoa - 443; Fungi - 138; Plants - 166; Viruses - 0; Other Eukaryotes - 67 (source: NCBI BLink).
Link
InterPro Scan - TAIR