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GT17335

CSHL Arabidopsis genetrap mutant lines

Original: GT17335

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Original: GT17335

Determination of insertion point(s)

  • 3 prime edge [+] show sequence

    1. Chromosome: 2; Position: 386336 [Map]; Strand: w
      • AT2G01850.1 - [+] show detail - endoxyloglucan transferase A3
        Distance: 0; Region: intron3 (CDS)
    Flanking Genome Sequence: GT17335 - 3-prime edge
    TTACCGACCG TTACCGACCG TTTTCATCCC TACTTAAAAT TGACAGGAAC 
    ATTACAACCA AAAGCAAATA ATGTCCCAAG CATCACAAAA CTTTCCACAA
    GAAGTAATAA GAATTAATAT CCACCAAAGA AAATTGAATC ATATTTTTTC
    AACAAAAAGA TCGTCCCATC ATTAAAACCC CACTTGGGTT TCCTTAAATA
    GAAGATCATA TTATTGAATC CATAAAGCTT TTAAATCAAA TGGGGTCAAT
    AGCCTAACCT CCTTTAAATT GAACCAAACA AACAAAGATT AAGAGAGAAT
    TGGTACTTTT TTTTTTACTT ACATGATGTG AGAATCAAAC CAAAGGATAC
    TGTATTGATG AAAATCTTCA GTAGGATCAA ACCAAAAATT ATATCTCTCT
    TCCCTTCCGG AAGGAGAACT TCCATTACCG TAAATGTTTG TCTGAACTCT
    CCATTCTTTT TCTCTAAGGT TACCAAAAAA CTCAAAATCT ATCTCATCAG
    GATT
  • 5 prime edge [+] show sequence

    1. Chromosome: 2; Position: 386415 [Map]; Strand: w
      • AT2G01850.1 - [+] show detail - endoxyloglucan transferase A3
        Distance: 0; Region: intron3 (CDS)
    Flanking Genome Sequence: GT17335 - 5-prime edge
    CCTGATTTTA AGTGTGTCTG TGATCGCCTA AAATGGTTTA CAGCTTTCGT 
    TTTTTGGCAT CAACAATGAC CCCATAGAGA GTATGTTTGG GGTCCAATTC
    ACAAGTTGAG AATCTTTACT TAAGTTCACA AAAGCTACAA ATTTTTATGC
    CAATAATGTT ATCTTTCTAA GCTTACAGAA TCTAACTTAC TTAATCCAAA
    TAAATGTTTT TTTTGGTTAT AATTATGTAG TTTGTACTAA ACTACTGATC
    AAAGTTGTGA AATTGTTGTT CTTTTTGGTT ATGCAGATTC TTTGTAGACA
    ATGTTCCTAT TAGAGAGGTC AAACGTACTG CGGAAATGGG TGGTCACTTT
    CCATCAAAGC CGATGTCTCT CTACACAACA ATATGGGACG GTTCTAAATG
    GGCAACTAAC GGTGGAAAGT ACGGTGTAAA CTACAAATAT GCGCCTTACA
    TTGCGCGGTT CTCGGATCTA GTCCTGCACG GCTGCCCCGT GGACCCTATC
    GAGCAGTTTC CGAGGTGCGA TGAAGGCGCG GCTGAGGATA TTCGTGCGGC
    GCAAGAGATT ACACCTTCAC AAAGGAGTAA AATGGATGTT TTCAGACGGA
    GACTCATGAC ATACTCATAT TGCTATGATC GGGCAAGGTA CAATGTTGCT
    TTATCGGAGT GTGTGGTGAA TCCCGCTGAG GCTCAAAGGC TTAGGGTTTA
    TGATCCG

AT2G01850.1

Model type
Protein coding
Short Description
endoxyloglucan transferase A3
Curator Summary
EXGT-A3 has homology to xyloglucan endotransglucosylases/hydrolases (XTHs). Mutants in this gene show a lesion mimic phenotype associated with leaf maturation and a reduction in the number of tertiary veins. Individual tracheary elements in the mutants are shorter, but phloem transport activity is not severely affected. EXGT-A3 plays a role in xyloglucan degradation in the differentiating tracheary elements of rosette leaves.
Computational Description
endoxyloglucan transferase A3 (EXGT-A3); FUNCTIONS IN: hydrolase activity, acting on glycosyl bonds, xyloglucan:xyloglucosyl transferase activity; INVOLVED IN: phloem or xylem histogenesis; LOCATED IN: endomembrane system, cell wall, apoplast; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Xyloglucan endotransglucosylase/hydrolase (InterPro:IPR016455), Xyloglucan endo-transglycosylase, C-terminal (InterPro:IPR010713), Concanavalin A-like lectin/glucanase, subgroup (InterPro:IPR013320), Concanavalin A-like lectin/glucanase (InterPro:IPR008985), Glycoside hydrolase, family 16 (InterPro:IPR000757); BEST Arabidopsis thaliana protein match is: xyloglucan endotransglucosylase/hydrolase 28 (TAIR:AT1G14720.1); Has 2101 Blast hits to 2091 proteins in 291 species: Archae - 0; Bacteria - 238; Metazoa - 0; Fungi - 449; Plants - 1341; Viruses - 0; Other Eukaryotes - 73 (source: NCBI BLink).
Link
InterPro Scan - TAIR