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GT17357

CSHL Arabidopsis genetrap mutant lines

Original: GT17357

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Original: GT17357

Determination of insertion point(s)

  • 3 prime edge [+] show sequence

    1. Chromosome: 3; Position: 5868937 [Map]; Strand: w
      • AT3G17200.1 - [+] show detail - transposable element gene
        Distance: -786; Region: promoter
    Flanking Genome Sequence: GT17357 - 3-prime edge 
    TTTTACCGAC CGTTACCGAC CGTTTTCATC CCTATACGTA ATACACCAAT 
    ACTAGTAGTT TGAATCCGAA CGTGAGATTG GACCAATAAC AAACCATAAG 
    TAAAAAAAGA CGAGTGTCAT TATCAGACCC AAGCTCGGGC TACAAAAAAA 
    AATTATCGAT ACCCGCGTCC AACTACCTCT GCAGACATTG GTCCAAAGTT 
    AGGTGTTGAA AATAACACAT TTAATTACCA TTCGCGATCC CTCCAATTTA 
    AATCAGATTG CAGTTTAGAT ATTAATCGGA TTGATGTTGA ATATGTGTAA 
    TTTGGAATTC ATATTAATGT TTGATGGAAT AGAAATATAC ACCAAATCAC 
    GACTCAAATT AAACCCGGTA AAAAAACCAC TAAATATTTA TAATTTATGG 
    CAAACTCCTA ATATTATTAT ACATTAATTA ATAAATTTTA TGATCTGAAC 
    ATTGTTAATT TATAGAGTTT TTACTGTACT TTATATATAA TTTTTGTCGA 
    TAAATATGCA AATAACTTCG TTACATAAAT AGTAATGTAG TAATAAGGAG 
    AAAAAAACGA TGGAAATAAA GAATTAGAAT ACAAAAAATA TTTGTAAAGA 
    AACAAAATTC CTATGTACAA AACATGTTCA TTTATTTGAC GCGTAAGAAA 
    GTGGTTGCAC AGCTCTGCGG CAAAGCGTGG GTCTATTTGG AACAACATAT 
    TATTCCACAC AATAAGATCG TCTCTACTAT GCGTCTACAC ACAATAAGAA 
    GGTACAATTG CTGGATATGA TTT

  • 5 prime edge [+] show sequence

    1. Chromosome: 3; Position: 5868998 [Map]; Strand: w
      • AT3G17200.1 - [+] show detail - transposable element gene
        Distance: -725; Region: promoter
    Flanking Genome Sequence: GT17357 - 5-prime edge 
    TTCCATCCTA CTTTCTCCCT GATTACGTAG AATAAATGAC TCAATATTCA 
    ATCAGACGTC ATATCGAACA ACTCTCAATA TTCTCTAATC TCTATACCGA 
    AAATATATAT GTTCCTAATT AACTAATAAT ACCAAGCATT CAAAATATTC 
    GACCCGGCCC AAAACCAAAA GCATGCTTCA AAAACCAAAA TATATGATAA 
    ATCTAGCCAC AGTATATACG GATTATAAAT TGTTTTTGGT ACGTCTGTAA 
    ACTTTTTAGG GTTACATCGA TCATTTGGGT AGTGAAATCA ATCATCCGCC 
    TAAACGGAAT ACTTGAAATT TATGGTATAC CTTTTAATCT ACTTCTATAG 
    AATATCAGGT GCATTGACTA ATTAAGCAAT TTTTAAATAC CATCTAATAA 
    GCATTTTCGT TGTATAGTGG AGTATGTTTT AAAGGTGTGC TCCTGATTAC 
    ATAATTATAC GTAACTAATA AACTACTATT TTAAAATTTT GGTACGGCCG 
    GTCTCAATAG AAATTTAGAC GGATTCAATC ATCCAAAAAG ATGATATGAT 
    TTAAATTAAT GATGTGTTAC TAAATAGTAA ATTGAAGAAA GGGTACTTTA 
    ACGTTGCTTT CACATAAAAT ATGCCTAGCT AGACACACAC ACATATATCT 
    TTTCTGTATA AATCTCGAGA TGAATCATAT CTTTGGCTTT CAAAACAAGG 
    GTATCTCATA TTAAAAAAAA ACGTGAGCCC ACTAATTAAT ATGGTCACTT 
    CAATTCAAAT TCTCCTACTC TCTCTCTAAT ATCTCTCCCG CATGTGTGTG 
    TTTAGTGTTT ACACATGCGT TCGCTCATCT CTCTCT

AT3G17200.1

Model type
Transposable element gene
Short Description
transposable element gene
Computational Description
similar to unknown protein [Arabidopsis thaliana] (TAIR:AT5G13655.1); similar to hypothetical protein 23.t00046 [Brassica oleracea] (GB:ABD65629.1); contains domain no description (G3D.3.50.60.10); contains domain NON-LTR RETROELEMENT REVERSE TRANSCRIPTASE RELATED (PTHR19446:SF34); contains domain REVERSE TRANSCRIPTASES (PTHR19446); contains domain Clavaminate synthase-like (SSF51197)
Link
InterPro Scan - TAIR