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GT17377

CSHL Arabidopsis genetrap mutant lines

Original: GT17377

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Original: GT17377

Determination of insertion point(s)

  • 3 prime edge [+] show sequence

    1. Chromosome: 1; Position: 24057846 [Map]; Strand: w
      • AT1G64770.3 - [+] show detail - NDH-dependent cyclic electron flow 1
        Distance: 0; Region: exon1 (CDS)
      • AT1G64770.1 - [+] show detail - NDH-dependent cyclic electron flow 1
        Distance: 0; Region: exon1 (CDS)
      • AT1G64770.2 - [+] show detail - NDH-dependent cyclic electron flow 1
        Distance: 0; Region: exon1 (CDS)
    Flanking Genome Sequence: GT17377 - 3-prime edge 
    TTTACCGACC GTTACCGACC GTTTTCATCC CTAATAACAA CACCAACCCC 
    ACCTCTGCTC TCATCACCAT CAACTGTGTA AAGGACTTCC TCGAATCCCT 
    CGTCTTTCCA GTATACCTTT GGCTTATATG AAAGTACATG AGCATCTGAT 
    AGACTCAGTT TTAATGAACT TCCATTTCTG ACCTTAAGCT CTACCATAGG 
    AATGTTGTTT GATTCCGAGA ATTTTATGCC TTTTCGTCCG AATTTATCTT 
    CAAGCTTTTC AGTATTTATT GTCTGTGTCT GAGGAGCTGA AATTGAACTT 
    CTTACGGCTT TTGGTTTTGG GAGCAAAGAA AAAGAGATAA GAGAAGCCAT 
    TGATGGAGAG TAAGGAGAGG AAAAGATAAG ACAAATGGTG GAGAGAAAGG 
    AGAAGAAAAG ATAAGACAAA TGAAGTTTGT AGTGGACTTA GCCACCAAGG 
    AAAGTTAATC AGAATTGTCA AGCTTTATTA TAAACGAGCT TATCAAATTA 
    TCATTTTCTG ATCATAAGAT TTTTTTTTCC TTTTTTTTTA AAATCATAAA 
    AAGTTGTCTT GGGAGTTGGG CCGCCCTTAT GTAATGGTTA TCCCCCCATA 
    AAAA

  • 5 prime edge [+] show sequence

    1. Chromosome: 1; Position: 24057908 [Map]; Strand: w
      • AT1G64770.3 - [+] show detail - NDH-dependent cyclic electron flow 1
        Distance: 0; Region: exon1 (CDS)
      • AT1G64770.1 - [+] show detail - NDH-dependent cyclic electron flow 1
        Distance: 0; Region: exon1 (CDS)
      • AT1G64770.2 - [+] show detail - NDH-dependent cyclic electron flow 1
        Distance: 0; Region: exon1 (CDS)
    Flanking Genome Sequence: GT17377 - 5-prime edge 
    TTCCATCCTA CTTTCTCCCT GGTTGTTATC GTAAACGGCG CAAGAACCTA 
    AAGGAGGGAC TTCAGTAATC TCAGGATGTG AATGGAGTGA CAAGGATACT 
    GATTCAGACG CCATTGATGC TCTTCAGGTG ATTGATTCAA TACCTCAATA 
    TATATCAAAT TTTGTCCACA CAATGATGAA ATCTTTGGGA ACGTTCTCAG 
    ATCGAACTTA GCTGTACGGC CGGGGTTCTC GACATAACGT ATATCGTCTC 
    TCTCTACCCA GTAAGCATGG CTACAGCTCT GGTGGTGAAG AACAATGGTC 
    GCAAACCAGT TACCCTTAAA CCGGGGATTA TGAGTTACTT GAGGTTCAAG 
    AAACGGAGTG GGGCAGGAAT TCAAGGACTA AAGGGATGCT CTTATTGACC 
    CAACCCGCCT TTGTCATCGC CTTTTGAGCT CTTGTCTCCT TCCGAGGCAA 
    TGAAGGCGGA ATCTTCGGGG TGGTTCGGGT CGGAAGAAGG GGAAAAGCCG 
    GGGATTTGGG CAGAACAAGA TTCTGTTATT ACACTTCTTG AGAAAAAGAT 
    GAGTAGAATA TATGGTGCTC CTCCCGCTGA GAGATTAAAG GCAGTCTATA 
    ACACTCCACC TTCCAAATTT GAAACTATAG ATCACGTACC ATTCGTTTAT 
    ATTCAGTATG ATATCATAGT A

AT1G64770.1

Model type
Protein coding
Short Description
NDH-dependent cyclic electron flow 1
Curator Summary
encodes a novel subunit of the chloroplast NAD(P)H dehydrogenase complex, involved in cyclic electron flow around photosystem I to produce ATP.
Computational Description
NDH-dependent cyclic electron flow 1 (NDF2); FUNCTIONS IN: carbohydrate binding, catalytic activity; INVOLVED IN: photosynthetic electron transport in photosystem I; LOCATED IN: chloroplast thylakoid membrane, chloroplast, NAD(P)H dehydrogenase complex (plastoquinone); EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Glycoside hydrolase-type carbohydrate-binding (InterPro:IPR011013); BEST Arabidopsis thaliana protein match is: NDH-dependent cyclic electron flow 5 (TAIR:AT1G55370.2); Has 82 Blast hits to 81 proteins in 22 species: Archae - 0; Bacteria - 6; Metazoa - 0; Fungi - 5; Plants - 71; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT1G64770.2

Model type
Protein coding
Short Description
NDH-dependent cyclic electron flow 1
Curator Summary
encodes a novel subunit of the chloroplast NAD(P)H dehydrogenase complex, involved in cyclic electron flow around photosystem I to produce ATP.
Computational Description
NDH-dependent cyclic electron flow 1 (NDF2); INVOLVED IN: photosynthetic electron transport in photosystem I; LOCATED IN: chloroplast thylakoid membrane, chloroplast, NAD(P)H dehydrogenase complex (plastoquinone); EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: NDH-dependent cyclic electron flow 5 (TAIR:AT1G55370.2); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT1G64770.3

Model type
Protein coding
Short Description
NDH-dependent cyclic electron flow 1
Curator Summary
encodes a novel subunit of the chloroplast NAD(P)H dehydrogenase complex, involved in cyclic electron flow around photosystem I to produce ATP.
Computational Description
NDH-dependent cyclic electron flow 1 (NDF2); BEST Arabidopsis thaliana protein match is: NDH-dependent cyclic electron flow 5 (TAIR:AT1G55370.2).
Link
InterPro Scan - TAIR