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GT17400

CSHL Arabidopsis genetrap mutant lines

Original: GT17400

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Original: GT17400

Determination of insertion point(s)

  • 3 prime edge [+] show sequence

    1. Chromosome: 4; Position: 18110796 [Map]; Strand: w
      • AT4G38780.1 - [+] show detail - Pre-mRNA-processing-splicing factor
        Distance: 0; Region: intron1 (CDS)
      • AT4G38790.1 - [+] show detail - ER lumen protein retaining receptor family protein
        Distance: -565; Region: promoter
    Flanking Genome Sequence: GT17400 - 3-prime edge 
    CGGTAGAGGA TTTTACCGAC CGTTACCGAC CGTTTTCATC CGTGGTGGAA 
    ACTCAGAAGG AGGACATGCC ACCTGAGCAC GTTAGGAAAA TCATCAGGCG 
    AGTTTCTAAT TTTTCAATTT CGATTTCGAA ATCCAGTTGA CTGGGAAACG 
    AATCTGGTCC AATTTCTTTG TATTATTAGG TTTGGGTTAA GTTAGATTGA 
    AACTGACTCT GCGTTTTGAT TCAGGGATCA TGGTGATATG TCATCAAAGA 
    AACATCGACT TGATAAACGT GTATATCTTG GAGCACTTAA GTTCGTTCCT 
    CACGCAGTTT TCAAGCTCCT GGAGAATATG CCTATGCCCT GGGAACAGGT 
    AATTATTCAC TTAGTGATCT ATATCTCGCT TTAGTTGTTC TCCTGCTCTG 
    CTCAAAATTT TGAACTCAGA TATTTTCCAG GTCCGGGACG TGAAGGTCTT 
    GTACCACATC ACTGGAGCTA TTACATTTGT GAACGAAGTA CGATGGGTTG 
    TGGAACCTAT TTACATGGCT CAGGTGGGTG AATAATCTCC CTCTCT

  • 5 prime edge [+] show sequence

    1. Chromosome: 4; Position: 18110858 [Map]; Strand: w
      • AT4G38780.1 - [+] show detail - Pre-mRNA-processing-splicing factor
        Distance: 0; Region: exon1 (CDS)
      • AT4G38790.1 - [+] show detail - ER lumen protein retaining receptor family protein
        Distance: -503; Region: promoter
    Flanking Genome Sequence: GT17400 - 5-prime edge 
    ACTTTCTCCC TGGTTTCCCG AACCAAACTT CCTCTTGTCG CCGTACCGTT 
    TGGAATTTAG CTGCATCCAT GTTCTCGCCT TCCTCTCACT CGACGACTCT 
    GCATCCTCGG GAGTAGGAAC CGTCGGAGTA TTCCGATTAG AAGGCGCCGT 
    GTAAGAAGGA TGATCAGCGG GATGTGAAGG TGTCTGCATC CTCGAACCGT 
    CGGTACCAGG AGGAGCTAAG GACGTACCAT CAATGTTCCA CATAGCTTCA 
    GATTTCAAAT CCAAAGGCCC AGCAAAATCG CCGAGGAGCA AAACCCTAAA 
    ACCTCAGTGC GAGCCTTGAC GAACACGAAA ATCCCTAAAA TCACCGTCGT 
    CGGGTGAGGT TGGTAAGAAA GACGATTAAC CGAACGAAGA TATATATACG 
    AAGGCATTCA TGGGCCTTTT AGAAAAAAAA TAGATACGAT TATGGGCCTA 
    ATTTATGGAT TCAGTCACGG CTCATTTAGT ATTTAAGAGT AAGAGATGTG 
    TGGAAGGGGT GATTTGGTAA TTTACATTCA AGTCAACCAA AACCAGACTT 
    TTTAATCTCT CTCGATCAGA AGTTACCTTT TTCACTTTTG CCGAGAAAAT 
    CNGAGACCGA AGAAGAAGAA AAGCGAAAAA AAGCAAAACA TGAAGGCGAC 
    GACGAAGACT CCGATCCACG TGGTGTGGTC ATGGGTTAGG AGACAACCTC 
    CGAAGGTGAA GGCTTTTCTC GCCGTGGTCA CTGGCATGGC GGCTTTG

AT4G38780.1

Model type
Protein coding
Short Description
Pre-mRNA-processing-splicing factor
Computational Description
Pre-mRNA-processing-splicing factor; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: nuclear mRNA splicing, via spliceosome; LOCATED IN: spliceosomal complex; EXPRESSED IN: 19 plant structures; EXPRESSED DURING: 8 growth stages; CONTAINS InterPro DOMAIN/s: Mov34/MPN/PAD-1 (InterPro:IPR000555), Pre-mRNA-processing-splicing factor 8, U5-snRNA-binding (InterPro:IPR019581), Pre-mRNA-processing-splicing factor 8 (InterPro:IPR012591), Pre-mRNA-processing-splicing factor 8, U6-snRNA-binding (InterPro:IPR019580), PROCN (InterPro:IPR012592), PRP8 domain IV core (InterPro:IPR021983), PRO, C-terminal (InterPro:IPR012984), RNA recognition motif, spliceosomal PrP8 (InterPro:IPR019582); BEST Arabidopsis thaliana protein match is: Pre-mRNA-processing-splicing factor (TAIR:AT1G80070.1); Has 803 Blast hits to 702 proteins in 309 species: Archae - 0; Bacteria - 0; Metazoa - 318; Fungi - 227; Plants - 60; Viruses - 0; Other Eukaryotes - 198 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT4G38790.1

Model type
Protein coding
Short Description
ER lumen protein retaining receptor family protein
Computational Description
ER lumen protein retaining receptor family protein; FUNCTIONS IN: ER retention sequence binding, receptor activity; INVOLVED IN: protein retention in ER lumen, protein transport; LOCATED IN: integral to membrane; CONTAINS InterPro DOMAIN/s: ER lumen protein retaining receptor (InterPro:IPR000133); BEST Arabidopsis thaliana protein match is: ER lumen protein retaining receptor family protein (TAIR:AT2G21190.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Link
InterPro Scan - TAIR