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Mutant Lines
GT17407

GT17407

CSHL Arabidopsis genetrap mutant lines

Original: GT17407

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Original: GT17407

Determination of insertion point(s)

3 prime edge [+] show sequence

Chromosome: 3; Position: 2946964 [Map]; Strand: w
- AT3G09600.1 - [+] show detail - Homeodomain-like superfamily protein
  Distance: 0; Region: exon2 (CDS)
- AT3G09600.2 - [+] show detail - Homeodomain-like superfamily protein
  Distance: 0; Region: exon2 (CDS)

ACGGTAGAGG TATTTTACCG ACCGTTACCG ACCGTTTTCA TCCCTACTTT 
GAACCAACAA AATCTTCAAT CTTCTTCTCG CTCCACTAAA ACCTAAGGAA 
CATAGAGGAG TAGTAGTATC AGCAGAATCA GGTCCTAGTT ACATCAATAA 
CACTTTCAAA AAGTCAACAC AAGTATAAAT TTATTACAGT TGAAGTGCTC 
CAAGAAGCAG ATCTTTTTAG CTAAGCAGAT TTTTTATAGC TAAGTTACTA 
CTAGACCTAA GCTAAGTAAC ATAAACTTTC CTCTGTTTGT TCAGTCTATA 
ACTAACTAAA CTCAGAAATC AGCAGCAAAC TAAGAAATTT GAAGTCTCTA 
AAAACAGAGA AACAGAGATA AATTATTACA GTTGAAGTGC TTCAAGAAAC 
TTATCGTGCT CTTCCTC

AT3G09600.1

Model type: Protein coding
Short Description: Homeodomain-like superfamily protein
Computational Description: Homeodomain-like superfamily protein; FUNCTIONS IN: DNA binding, sequence-specific DNA binding transcription factor activity; INVOLVED IN: in 9 processes; LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: SANT, DNA-binding (InterPro:IPR001005), Homeodomain-like (InterPro:IPR009057), Myb, DNA-binding (InterPro:IPR014778), HTH transcriptional regulator, Myb-type, DNA-binding (InterPro:IPR017930), Myb-like DNA-binding domain, SHAQKYF class (InterPro:IPR006447); BEST Arabidopsis thaliana protein match is: LHY/CCA1-like 1 (TAIR:AT5G02840.3); Has 1480 Blast hits to 1470 proteins in 124 species: Archae - 0; Bacteria - 0; Metazoa - 145; Fungi - 6; Plants - 1120; Viruses - 0; Other Eukaryotes - 209 (source: NCBI BLink).
Link: InterPro Scan - TAIR

AT3G09600.2

Model type: Protein coding
Short Description: Homeodomain-like superfamily protein
Computational Description: Homeodomain-like superfamily protein; FUNCTIONS IN: DNA binding, sequence-specific DNA binding transcription factor activity; INVOLVED IN: in 9 processes; LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: SANT, DNA-binding (InterPro:IPR001005), Homeodomain-like (InterPro:IPR009057), Myb, DNA-binding (InterPro:IPR014778), HTH transcriptional regulator, Myb-type, DNA-binding (InterPro:IPR017930), Myb-like DNA-binding domain, SHAQKYF class (InterPro:IPR006447); BEST Arabidopsis thaliana protein match is: LHY/CCA1-like 1 (TAIR:AT5G02840.2); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).
Link: InterPro Scan - TAIR