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GT17414

CSHL Arabidopsis genetrap mutant lines

Original: GT17414

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Original: GT17414

Determination of insertion point(s)

  • 3 prime edge [+] show sequence

    1. Chromosome: 3; Position: 22769171 [Map]; Strand: c
      • AT3G61520.1 - [+] show detail - Pentatricopeptide repeat (PPR) superfamily protein
        Distance: 0; Region: exon1 (CDS)
    Flanking Genome Sequence: GT17414 - 3-prime edge 
    GGTAGAGGTA TTTTACCGAC CGTTACCGAC CGTTTTCATC CCTGCTCTCC 
    TTGGGTTTTC TCGTTAAGAC ACTTAAACAA GGCATTGTAA GTTTCAACAT 
    TAGGTCTCAC CATCTTCATC TTCNTTCTCC CCCGACAAAG AGAGCGCTTG 
    CCCGAAATTC CCCAGCTTAG AAAATGCGTT TATGAGAATG TTGTATATTA 
    CAGTGTTCGG ATTGACCTTT GAGTGCAAAC CCATGTCCTT AAAGAGCTTC 
    AATGCTTCGT CTAATTCGCC GACTGAGCAA TAAGCGTCAA TCACCGCTCC 
    ATATGTCGTG ACAGTCGGGT CTAACCCGTC TTCTCTCATC TGCTCCATCA 
    TTCTCTCAAC ACTCTCGAAG TCCTTGTGTT TACCGAAAAA CGAAATCAGA 
    GTGTTGTAAG TGATGGAATC AGGTTTCTTC CCTTCTTTTT CCATATCGGT 
    TAGCATCTCA TAGACTTTCT CTGTATT

  • 5 prime edge [+] show sequence

    1. Chromosome: 3; Position: 22769109 [Map]; Strand: c
      • AT3G61520.1 - [+] show detail - Pentatricopeptide repeat (PPR) superfamily protein
        Distance: 0; Region: exon1 (CDS)
    Flanking Genome Sequence: GT17414 - 5-prime edge 
    CTTTCTCCCT AAGGAGAGAC ATTACTTAAA CTGATGGATG AGATGGTCGA 
    ACAGTCTTGT GAACCAAATC AGATCACAAT GGAGATTCTA ATGGAGCGTC 
    TCTCAGGTTC TGATGAGTTA GTTAAGCTGA GGAAGTTTAT GCAAGGCTAC 
    TCTGTTGCTT CGCTGACCGA GAAAGCTTCA CCTTTCGATG TCTTTAGCTT 
    GGGATAATGT TCGTTTAGAT ACAGTAACCA TTACTATAAT GTTTTTAATA 
    ATTTCTTGAT TATGCATTTT ATATAATTAC ACAATCGCTA TTTATTTATG 
    TATGGTTATT TGCTAAATTT TGTTAAAATA AAAAATCCAG CTTTCTACAA 
    TTCTCAATGC AGTAACTTAA GTAAGCCCAT TTACTTATGG GCCTCGTGTA 
    TTTGAGGTCC CCGAGACTTG GACAGACACG TGTCTCGAAT TGAATGGTTC 
    AT

AT3G61520.1

Model type
Protein coding
Short Description
Pentatricopeptide repeat (PPR) superfamily protein
Computational Description
Pentatricopeptide repeat (PPR) superfamily protein; CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885); BEST Arabidopsis thaliana protein match is: Pentatricopeptide repeat (PPR) superfamily protein (TAIR:AT5G28460.1); Has 51879 Blast hits to 14395 proteins in 309 species: Archae - 5; Bacteria - 71; Metazoa - 859; Fungi - 887; Plants - 48189; Viruses - 0; Other Eukaryotes - 1868 (source: NCBI BLink).
Link
InterPro Scan - TAIR