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GT17439

CSHL Arabidopsis genetrap mutant lines

Original: GT17439

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Original: GT17439

Determination of insertion point(s)

  • 3 prime edge [+] show sequence

    1. Chromosome: 3; Position: 2631407 [Map]; Strand: w
      • AT3G08660.1 - [+] show detail - Phototropic-responsive NPH3 family protein
        Distance: 0; Region: intron2 (CDS)
    Flanking Genome Sequence: GT17439 - 3-prime edge 
    AACGGTAGAG GTATTTTACC GACCGTTACC GACCGTTTTC ATCCCTAGTG 
    TGCACTAACC TTGTGAAGTA GAAATGATTC TCCATCGACA ACAACAATGA 
    TGTCACCCGC AACATCAGAG AATATGCTGC AATTTTCATA AAAACAAAAC 
    TCAAACCATT ACATTCATAA TAACAAGTGA ATACAGATAA GCTTAACAGA 
    GATTAATACA GAACTCGGGG GAGAGATAGA GAAAGAAGAC AGACCGAGTG 
    GTGAAAGTTG GAGGAACAGA GGAGCGATTG TTACAAGGAG GAGATGAAGA 
    AGGGAGAGAC AAAGTGCTGT CTGAGCCCAT CGTGAATCTC TATCTCACTC 
    ACCAGATCGC CGGGAGAATC GATAGTACTG AAAATAGAGT CTTGGGAATT 
    ACAGACCAAT CCCTATCTCT CTGCTTTTGC TTTGTGTGCA GACAAAGACG 
    CTAATGCATT CTTGAGAAAT AAGAAAGTAA CGGAGAATAA AGATTCTCGA 
    GTGCTCAAGA GGAGAAGCTT TATTCAAAAA GCATTATGTT ACGGCGGTAA 
    TATTTTCTGC CCTTATATTT TTGTCATCTT TATTTTTTGA AAACTATTTA 
    GTGTATTTAC TTTCCTAAAT CGGATGTAAA AAATAAACTA ATTGATTCTG 
    TTCCTAATAA ACCCATAAAA ACTACTATTG TTTTAAGGGA AAC

  • 5 prime edge [+] show sequence

    Not mapped

    Flanking Genome Sequence: GT17439 - 5-prime edge 
    CCTACTTTCT CCCTGGCTAC GAGTTTTTTT TTTTTTTTTT ACCGGTTTTA 
    AAACAAACCC CTTCAAAAAA AAAAAAAAAC CTTGCCTTTT CCCTTTATAC 
    CCTGGAGGGG AAAAAAAAAA AAAAAGGGGA AAAATTCCAA GGGCCTTTTT 
    TTTTAAAATG GACTTAAAAA TTTCCCGGGG GGACCTTCCC CCTTTGAACC 
    CCCCCAAAAA TTTTGCCCCC GGATTAATTT CAAAAACCCC GCCTTTAAAG 
    GGGGCCCCCC CCCTTGGCCC GGGGGGTTTT TTGGGAGGGC CGGGGGCCCC 
    AAAAAAAAAA ATTTTTTTTT TTCGGCCCAA AATTTCCCCC CCCAAAACTT 
    TTTTCCCAAT TTTCAAAAAA TTTCCCCAAA ACTTTTTAAA ACCAGGGTAA 
    AAGATTTTGG GCCCGCAAAT GGACCCTTGG C

AT3G08660.1

Model type
Protein coding
Short Description
Phototropic-responsive NPH3 family protein
Computational Description
Phototropic-responsive NPH3 family protein; FUNCTIONS IN: signal transducer activity; INVOLVED IN: response to light stimulus, N-terminal protein myristoylation; LOCATED IN: chloroplast; EXPRESSED IN: 8 plant structures; EXPRESSED DURING: 6 growth stages; CONTAINS InterPro DOMAIN/s: NPH3 (InterPro:IPR004249), BTB/POZ (InterPro:IPR013069), BTB/POZ fold (InterPro:IPR011333), BTB/POZ-like (InterPro:IPR000210); BEST Arabidopsis thaliana protein match is: Phototropic-responsive NPH3 family protein (TAIR:AT3G08570.1); Has 956 Blast hits to 919 proteins in 46 species: Archae - 0; Bacteria - 0; Metazoa - 68; Fungi - 0; Plants - 886; Viruses - 0; Other Eukaryotes - 2 (source: NCBI BLink).
Link
InterPro Scan - TAIR