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GT17449

CSHL Arabidopsis genetrap mutant lines

Original: GT17449

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Original: GT17449

Determination of insertion point(s)

  • 3 prime edge [+] show sequence

    1. Chromosome: 3; Position: 8139482 [Map]; Strand: c
      • AT3G22960.1 - [+] show detail - Pyruvate kinase family protein
        Distance: 0; Region: exon1 (CDS)
    Flanking Genome Sequence: GT17449 - 3-prime edge
    TTTTACCGAC CGTTACCGAC CGTTTTCATC CCTACTTCCG TCGCTTCCCT 
    CTAACAACCA TCAAATACAC TTCCATCAGA GCCTCCTCGT CACCATCTCC
    TTCACCGGAT CTCGATTCAT CGTCCTCATC ATCATCCTCG CAAGTACTTC
    TCTCACCTAA CGGTACTGGT GCTGTGAAGT CTGATGAGAG ATCCGTTGTC
    GCTACGGCGG TTACGACTGA TACGTCTGGG ATTGAGGTTG ATACTGTGAC
    GGAAGCGGAG CTTAAGGAGA ATGGATTTAG AAGTACGAGG AGGACGAAGC
    TGATCTGTAC GATCGGACCG GCGACTTGTG GATTTGAGCA GCTTGAGGCG
    CTTGCTGTGG GAGGTATGAA TGTGGCGAGG CTTAATATGT GTCACGGTAC
    GCGTGATTGG CATCGCGGTG TGATTCGTAG TGTTCGGAGG CTTAATGAGG
    AGAAAGGCTT TGCGGTTGCT ATTATGATGG ATACTGAAGG TAGTGAGATT
    CATATGGGAG ATCTTGGTGG TGAAGCTTCA GCTAAAGCAG AGGTTGTTTA
    ATCTCTTCTT ATTTCGATTC GAGCTTGATG TAGACATTGT TGTGTTTGTG
    ATTTAGATGT TTAAGCTTTG GTGGTGATGA CATTTCTACA GGATGGTGAG
    GTTTGGACTT TCACTGTTAG AGCTTT

AT3G22960.1

Model type
Protein coding
Short Description
Pyruvate kinase family protein
Curator Summary
encodes a chloroplast pyruvate kinase alpha subunit. Important for seed oil biosynthesis. Ubiquitously expressed, with significantly increased expression in maturing seeds.
Computational Description
PKP-ALPHA; FUNCTIONS IN: pyruvate kinase activity; INVOLVED IN: response to cadmium ion, glycolysis, lipid metabolic process; LOCATED IN: chloroplast stroma, chloroplast; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Pyruvate kinase, C-terminal-like (InterPro:IPR015795), Pyruvate kinase, active site (InterPro:IPR018209), Pyruvate kinase, beta-barrel-like (InterPro:IPR011037), Pyruvate kinase, alpha/beta (InterPro:IPR015794), Pyruvate/Phosphoenolpyruvate kinase, catalytic core (InterPro:IPR015813), Pyruvate kinase (InterPro:IPR001697), Pyruvate kinase, barrel (InterPro:IPR015793); BEST Arabidopsis thaliana protein match is: plastidic pyruvate kinase beta subunit 1 (TAIR:AT5G52920.1); Has 10289 Blast hits to 10239 proteins in 2715 species: Archae - 167; Bacteria - 6049; Metazoa - 538; Fungi - 221; Plants - 529; Viruses - 0; Other Eukaryotes - 2785 (source: NCBI BLink).
Link
InterPro Scan - TAIR