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GT17456

CSHL Arabidopsis genetrap mutant lines

Original: GT17456

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Original: GT17456

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 1; Position: 28569613 [Map]; Strand: c
      • AT1G76135.1 - [+] show detail - MIR394B; miRNA
        Distance: 685; Region: intergenic
      • AT1G76140.1 - [+] show detail - Prolyl oligopeptidase family protein
        Distance: -1517; Region: intergenic
    Flanking Genome Sequence: GT17456 - 5-prime edge 
    CTTTATCCCT GAATACTCTA TAGAAACATG TGAGTGTGAC TATACAGAAA 
    ATGTATACAT TCCGACTATA ACAAAAGAAA ACGTCATAAT AATGCCTAAG 
    AAAAATACTC CATTTTAAGA TTGAACTCGA TATTTCTCGA ACCATTTATA 
    GGATTGAACA CAACTCATCA GATAATAAAG AAACAAATAT ACTCCTATAT 
    AAACAAACAA AAACTCACTC TTCCTATATA GTATATAGAT TCAAATTAAA 
    AAAAAAAAAG GGGAGAACTC TTAAAAACCC GGGGGGGGGT TCCCCAACCT 
    AAAAGGGGGG GGGAAATTCC CCTTTTTATA ACCAAATTCC CCCAAGAATT 
    CAAACCCCCC GGACCTTGGG GGGGGGAAGG GGGCCCCTTT TTTTAAAAAA 
    AAATTTCCCT TTCCCAAAGG GGGGAAAAGT TTTAAAAGCC CCCCCTTCTT 
    TGAAAATCCC CATTTGGCAA CCCCCGTGGA ATTTAAAAAA AAGAGGGGGT 
    CCCCCCAGGG AGGGTTCCAC CGGAATAGTC TTGGAAAAAA ACAAAGTTTG 
    GCCGAAAAAT CCAGGGGGAC CGGCAAATTC CAAGGGATTT TTTTTTATCA 
    AAAAAAAGGA ACCCCCCCCG CCCCCAAAAA AAAAAAAGGG TAAAGGTTCC 
    GGAAAAACCC CAATTTTT

AT1G76135.1

Model type
miRNA
Short Description
MIR394B; miRNA
Curator Summary
Encodes a microRNA that targets one member of the F-box family. MicroRNAs are regulatory RNAs with a mature length of ~21-nucleotides that are processed from hairpin precursors by Dicer-like enzymes. MicroRNAs can negatively regulate gene expression by attenuating translation or by directing mRNA cleavage.Mature sequence: UUGGCAUUCUGUCCACCUCC. It targets F-box protein AT1g27340.
Link
InterPro Scan - TAIR

AT1G76140.1

Model type
Protein coding
Short Description
Prolyl oligopeptidase family protein
Computational Description
Prolyl oligopeptidase family protein; FUNCTIONS IN: serine-type peptidase activity, serine-type endopeptidase activity; INVOLVED IN: proteolysis; LOCATED IN: chloroplast; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Peptidase S9, prolyl oligopeptidase, catalytic domain (InterPro:IPR001375), Peptidase S9A, oligopeptidase, N-terminal beta-propeller (InterPro:IPR004106), Peptidase S9A, prolyl oligopeptidase (InterPro:IPR002470); BEST Arabidopsis thaliana protein match is: Prolyl oligopeptidase family protein (TAIR:AT1G20380.1); Has 8127 Blast hits to 8050 proteins in 1368 species: Archae - 105; Bacteria - 3923; Metazoa - 339; Fungi - 43; Plants - 244; Viruses - 0; Other Eukaryotes - 3473 (source: NCBI BLink).
Link
InterPro Scan - TAIR