1. Home
  2. Mutant Lines
  3. GT17474

GT17474

CSHL Arabidopsis genetrap mutant lines

Original: GT17474

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Original: GT17474

Determination of insertion point(s)

Notice

More than one insertion position or no insertion point is expected.

  • 3 prime edge [+] show sequence

    1. Chromosome: 3; Position: 22369274 [Map]; Strand: w
      • AT3G60520.1 - [+] show detail - unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein ...
        Distance: -6695; Region: intergenic
      • AT3G60530.1 - [+] show detail - GATA transcription factor 4
        Distance: -3941; Region: intergenic
    Flanking Genome Sequence: GT17474 - 3-prime edge 
    TTTTACCGAC CGTTACCGAC CGTTTTCATC CCTACTCACA ATTGCATACA 
    CACTTAACCA CTAGGCAACT CTATTTTATC GTATT

  • 3 prime edge [+] show sequence

    1. Chromosome: 3; Position: 3436126 [Map]; Strand: w
      • AT3G10970.2 - [+] show detail - Haloacid dehalogenase-like hydrolase (HAD) superfamily protein
        Distance: 0; Region: exon1 (5UTR)
      • AT3G10970.1 - [+] show detail - Haloacid dehalogenase-like hydrolase (HAD) superfamily protein
        Distance: 0; Region: exon1 (5UTR)
      • AT3G10970.3 - [+] show detail - Haloacid dehalogenase-like hydrolase (HAD) superfamily protein
        Distance: 0; Region: exon1 (5UTR)
    Flanking Genome Sequence: GT17474 - 3-prime edge 
    TTTACCGACC GTTACCGACC GTTTTCATCC CTAAAAACGA ATGCTTTTGT 
    TCAATCATCT GTCTCAGTTG TCTGATTCCG CAAGAAACCC TCAATCAAAT 
    AAATCA

  • 5 prime edge [+] show sequence

    1. Chromosome: 3; Position: 22369342 [Map]; Strand: w
      • AT3G60520.1 - [+] show detail - unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein ...
        Distance: -6763; Region: intergenic
      • AT3G60530.1 - [+] show detail - GATA transcription factor 4
        Distance: -3873; Region: intergenic
    Flanking Genome Sequence: GT17474 - 5-prime edge 
    CTACTTTCTC CCTGATTGTG AGACACCCAT AATTCAAAAC TTCAAATTCA 
    TGGCAACAGA ATAAGTAAGC TCGGACAGAA ATGACAACAA ATACTATACA 
    AAATTTACGA TGTAACTTTT TCCTACTACT TGTGATTAAC TTTTAAAAGT 
    TTTGCAAATA AAGGACACCA AAAAAAATGT TTTACAACGA AAAAATAATC 
    ATATATGGGT CTACGAAAGT GAACCTTCTG AATGAGACAG AAGTTGCCAG 
    CTGGAAAAAC TTTTGTCGGT AGTAAACTAA AAATTAAATT GAATAAAAAT 
    AATTTATCTC CGTAGCTTTT CCTCTAGTTT CGTGCCATCT TGGTTTAGAA 
    GTTAATGTCC ACTGCAGTCG GACTCTCAAG TATGAGTCAT ATAGTAAACG 
    AATAAACGAT ATTCAGAAAT GTTGCGACTA TTATAGGAAA ATATATCACG 
    TCATCTTACG ATTACGATTA CATTTGTTTG TAGTAACTAA AAACCTAGTA 
    TATATAAAAT CTTTCAAAGC CACAATTCTC GCTTTTTTGT TTTTGTTTTT 
    CTATTA

AT3G10970.1

Model type
Protein coding
Short Description
Haloacid dehalogenase-like hydrolase (HAD) superfamily protein
Computational Description
Haloacid dehalogenase-like hydrolase (HAD) superfamily protein; FUNCTIONS IN: hydrolase activity, catalytic activity; INVOLVED IN: metabolic process; LOCATED IN: chloroplast; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Haloacid dehalogenase-like hydrolase (InterPro:IPR005834), HAD-superfamily hydrolase, subfamily IA, variant 3 (InterPro:IPR006402); BEST Arabidopsis thaliana protein match is: Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (TAIR:AT4G11570.2); Has 4274 Blast hits to 4272 proteins in 1370 species: Archae - 31; Bacteria - 3851; Metazoa - 11; Fungi - 7; Plants - 184; Viruses - 0; Other Eukaryotes - 190 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT3G10970.2

Model type
Protein coding
Short Description
Haloacid dehalogenase-like hydrolase (HAD) superfamily protein
Computational Description
Haloacid dehalogenase-like hydrolase (HAD) superfamily protein; FUNCTIONS IN: hydrolase activity, catalytic activity; INVOLVED IN: metabolic process; LOCATED IN: chloroplast; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Haloacid dehalogenase-like hydrolase (InterPro:IPR005834), HAD-superfamily hydrolase, subfamily IA, variant 3 (InterPro:IPR006402); BEST Arabidopsis thaliana protein match is: Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (TAIR:AT4G11570.2); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT3G10970.3

Model type
Protein coding
Short Description
Haloacid dehalogenase-like hydrolase (HAD) superfamily protein
Computational Description
Haloacid dehalogenase-like hydrolase (HAD) superfamily protein; FUNCTIONS IN: hydrolase activity, catalytic activity; INVOLVED IN: metabolic process; LOCATED IN: chloroplast; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Haloacid dehalogenase-like hydrolase (InterPro:IPR005834), HAD-superfamily hydrolase, subfamily IA, variant 3 (InterPro:IPR006402); BEST Arabidopsis thaliana protein match is: Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (TAIR:AT4G11570.2); Has 3249 Blast hits to 3249 proteins in 1169 species: Archae - 14; Bacteria - 2940; Metazoa - 3; Fungi - 1; Plants - 144; Viruses - 0; Other Eukaryotes - 147 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT3G60520.1

Model type
Protein coding
Computational Description
unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G02070.1); Has 107 Blast hits to 107 proteins in 14 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 107; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT3G60530.1

Model type
Protein coding
Short Description
GATA transcription factor 4
Curator Summary
Encodes a member of the GATA factor family of zinc finger transcription factors.
Computational Description
GATA transcription factor 4 (GATA4); CONTAINS InterPro DOMAIN/s: Zinc finger, NHR/GATA-type (InterPro:IPR013088), Transcription factor, GATA, plant (InterPro:IPR016679), Zinc finger, GATA-type (InterPro:IPR000679); BEST Arabidopsis thaliana protein match is: GATA transcription factor 2 (TAIR:AT2G45050.1); Has 1515 Blast hits to 1478 proteins in 168 species: Archae - 0; Bacteria - 0; Metazoa - 43; Fungi - 592; Plants - 818; Viruses - 0; Other Eukaryotes - 62 (source: NCBI BLink).
Link
InterPro Scan - TAIR