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GT17482

CSHL Arabidopsis genetrap mutant lines

Original: GT17482

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Original: GT17482

Determination of insertion point(s)

Notice

More than one insertion position or no insertion point is expected.

  • 3 prime edge [+] show sequence

    1. Chromosome: 5; Position: 10316635 [Map]; Strand: c
      • AT5G28340.1 - [+] show detail - Tetratricopeptide repeat (TPR)-like superfamily protein
        Distance: 0; Region: exon6 (CDS)
    2. Chromosome: 5; Position: 10339248 [Map]; Strand: w
      • AT5G28380.1 - [+] show detail - Tetratricopeptide repeat (TPR)-like superfamily protein
        Distance: 0; Region: exon4 (CDS)
    Flanking Genome Sequence: GT17482 - 3-prime edge 
    ACGTTACCGA CCGTTTTCAT CCCTACTTCC GTAGGCGAAA CTATCACAAG 
    GCGATTGCTA TCTTCAACGT ATCGTTTATG GACTACTGGT TCAAGCAAGG 
    CAAAGACGAG GAGGCTATGG AGATTTTCGC AACTCTCGAA CATGCTGAAT 
    TGCTCAACAC CATTTCCGGA AACGGAGTTT TGAAATGCCT TGTGGAGCAC 
    GGTAGGAAAA CAGAGGCCTG GGAATTGTTC TTAGATATGA TAGAAATCTG 
    TGATTCCGAG ACGGTTGGCA TAATAATGTC CAAGGAGGGT TTTTTCGGCG 
    AAAAGACTAT CCCGTTTGA

AT5G28340.1

Model type
Protein coding
Short Description
Tetratricopeptide repeat (TPR)-like superfamily protein
Computational Description
Tetratricopeptide repeat (TPR)-like superfamily protein; CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885); BEST Arabidopsis thaliana protein match is: Tetratricopeptide repeat (TPR)-like superfamily protein (TAIR:AT5G28380.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT5G28380.1

Model type
Protein coding
Short Description
Tetratricopeptide repeat (TPR)-like superfamily protein
Computational Description
Tetratricopeptide repeat (TPR)-like superfamily protein; CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885); BEST Arabidopsis thaliana protein match is: Tetratricopeptide repeat (TPR)-like superfamily protein (TAIR:AT5G28340.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Link
InterPro Scan - TAIR