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GT17487

CSHL Arabidopsis genetrap mutant lines

Original: GT17487

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Original: GT17487

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 2; Position: 16688189 [Map]; Strand: c
      • AT2G39980.1 - [+] show detail - HXXXD-type acyl-transferase family protein
        Distance: 0; Region: exon1 (3UTR)
      • AT2G39975.1 - [+] show detail - CONTAINS InterPro DOMAIN/s: C2 calcium-dependent membrane targeting (InterPro...
        Distance: 0; Region: exon1 (CDS)
    Flanking Genome Sequence: GT17487 - 5-prime edge 
    CATCAATTTG CCTTAACCAG TCTCGAGGCC AAGATAAACT TCAAGATAAC 
    CAACAGTTAC GATATTTCCA CTGGTGTCCA AGTTCTGAAG TTTGATCTTA 
    CGGTACACAT TAGCGTTTGT TTTCATGGGC AATGCTGTAT TTGCCCTCCC 
    AATGAAAAAT GCGTCAGTGT CAGCTGAATT TACACTGAAC AACTCCAAAT 
    TGAGAAAAGA TGAAGCCATG TTTTGAGGAA GATGCAAAAC CTCACGGAAC 
    TCAGGATCTG CGTTTGTTGT CACAATCTTT GTTTGGCGTG GATCATCTTC 
    GTTAGTCCAA GCTCTCAACT TGTAGTTGTA TTTTTGTTCA T

AT2G39975.1

Model type
Protein coding
Computational Description
CONTAINS InterPro DOMAIN/s: C2 calcium-dependent membrane targeting (InterPro:IPR000008); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G40745.1); Has 7 Blast hits to 7 proteins in 2 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 7; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT2G39980.1

Model type
Protein coding
Short Description
HXXXD-type acyl-transferase family protein
Computational Description
HXXXD-type acyl-transferase family protein; FUNCTIONS IN: transferase activity, transferring acyl groups other than amino-acyl groups, transferase activity; INVOLVED IN: response to karrikin; LOCATED IN: cellular_component unknown; EXPRESSED IN: 17 plant structures; EXPRESSED DURING: 10 growth stages; CONTAINS InterPro DOMAIN/s: Transferase (InterPro:IPR003480); BEST Arabidopsis thaliana protein match is: HXXXD-type acyl-transferase family protein (TAIR:AT5G01210.1); Has 2459 Blast hits to 2362 proteins in 147 species: Archae - 0; Bacteria - 2; Metazoa - 0; Fungi - 105; Plants - 2350; Viruses - 0; Other Eukaryotes - 2 (source: NCBI BLink).
Link
InterPro Scan - TAIR