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GT17489

CSHL Arabidopsis genetrap mutant lines

Original: GT17489

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Original: GT17489

Determination of insertion point(s)

Notice

More than one insertion position or no insertion point is expected.

  • 3 prime edge [+] show sequence

    1. Chromosome: 4; Position: 75646 [Map]; Strand: w
      • AT4G00180.1 - [+] show detail - Plant-specific transcription factor YABBY family protein
        Distance: -262; Region: promoter
      • AT4G00180.2 - [+] show detail - Plant-specific transcription factor YABBY family protein
        Distance: -262; Region: promoter
    Flanking Genome Sequence: GT17489 - 3-prime edge 
    TAGAGGTATT TTACCGACCG TTACCGACCG TTTTCATCTT TATAAAACTT 
    TGAAATCTTT ATATCTATTA TTCCTCACCG ATCGGCTACT AATTCAATGG 
    TACTTGATAA TGATAATTAG TCCCAAAGTA GAATTTTTAT CTGATTATAT 
    AGAAACAAAG ACTAGTTCCG GTTTGATATA TAGAAGAAAG AAAAAGGATG 
    GATAGGAATA ATAAAGAAGA TAAACCGGTT CAAAAGGTAG TAAATGAGAA 
    TGCAGGTATG CAGCTTATCT CTACAATGGC CT

  • 5 prime edge [+] show sequence

    1. Chromosome: 4; Position: 110563 [Map]; Strand: c
      • AT4G00240.1 - [+] show detail - phospholipase D beta 2
        Distance: 0; Region: exon1 (CDS)
    Flanking Genome Sequence: GT17489 - 5-prime edge 
    CATGGATCAA TGTCTCATTC GGGTCCATTA GACCACCACC ACCCTCCAAT 
    GAGTTACTAT GCTTCTTTTG ATTACCAACA CCAACCTCCT CCTCCTTACC 
    CTCCAGTGAG TTACTATGCT TCGTTTTCAA GTCATTCAGA TTTATCATAC 
    TCAGGCAGGC TAGATTCGTC TGGTCATGGT TTTACATCTA CCGCATCGCC 
    GCATAGTCCC GGTATGCACA TTGTGCCCTT TGGTAAAGCC TCCTTGAAGG 
    TCCTCTTGTT GCATGGTAAT TTGGATATTT GGGTTTCTTG TGCTAATAAT 
    CTACCAAACT TAGATTTGTT TCATAAGACA TTGGGTGTTG TGTTTGGTGG 
    CATGACCAAT ATGATCGAAG GCCAGTTGAG CAAGAAGATC ACTAGTGATC 
    CTTACGTG

AT4G00180.1

Model type
Protein coding
Short Description
Plant-specific transcription factor YABBY family protein
Curator Summary
YABBY gene family member, likely has transcription factor activity, involved in specifying abaxial cell fate. Along with FIL, involved in patterning of the fruit. GUS reporter gene expression in seedlings is observed in the young leaves and as the leaf matures, expression is restricted to the abaxial tissues of leaves, expression is also observed on either side of the leaf margin in the younger tissues of leaf blades.
Computational Description
YABBY3 (YAB3); CONTAINS InterPro DOMAIN/s: High mobility group, superfamily (InterPro:IPR009071), YABBY protein (InterPro:IPR006780); BEST Arabidopsis thaliana protein match is: Plant-specific transcription factor YABBY family protein (TAIR:AT2G45190.1); Has 469 Blast hits to 469 proteins in 131 species: Archae - 0; Bacteria - 0; Metazoa - 4; Fungi - 6; Plants - 442; Viruses - 2; Other Eukaryotes - 15 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT4G00180.2

Model type
Protein coding
Short Description
Plant-specific transcription factor YABBY family protein
Curator Summary
YABBY gene family member, likely has transcription factor activity, involved in specifying abaxial cell fate. Along with FIL, involved in patterning of the fruit. GUS reporter gene expression in seedlings is observed in the young leaves and as the leaf matures, expression is restricted to the abaxial tissues of leaves, expression is also observed on either side of the leaf margin in the younger tissues of leaf blades.
Computational Description
YABBY3 (YAB3); FUNCTIONS IN: protein binding, sequence-specific DNA binding transcription factor activity; INVOLVED IN: fruit development, abaxial cell fate specification, regulation of transcription; EXPRESSED IN: 18 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: High mobility group, superfamily (InterPro:IPR009071), YABBY protein (InterPro:IPR006780); BEST Arabidopsis thaliana protein match is: Plant-specific transcription factor YABBY family protein (TAIR:AT2G45190.1); Has 465 Blast hits to 465 proteins in 131 species: Archae - 0; Bacteria - 0; Metazoa - 4; Fungi - 6; Plants - 438; Viruses - 2; Other Eukaryotes - 15 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT4G00240.1

Model type
Protein coding
Short Description
phospholipase D beta 2
Curator Summary
member of C2-PLD subfamily
Computational Description
phospholipase D beta 2 (PLDBETA2); FUNCTIONS IN: phospholipase D activity; INVOLVED IN: phosphatidylcholine metabolic process, metabolic process; LOCATED IN: membrane; EXPRESSED IN: 8 plant structures; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage, 4 anthesis, petal differentiation and expansion stage, LP.08 eight leaves visible; CONTAINS InterPro DOMAIN/s: C2 membrane targeting protein (InterPro:IPR018029), Phospholipase D (InterPro:IPR015679), C2 calcium/lipid-binding domain, CaLB (InterPro:IPR008973), Phospholipase D, plant (InterPro:IPR011402), C2 calcium-dependent membrane targeting (InterPro:IPR000008), Phospholipase D/Transphosphatidylase (InterPro:IPR001736); BEST Arabidopsis thaliana protein match is: phospholipase D beta 1 (TAIR:AT2G42010.1); Has 2407 Blast hits to 1935 proteins in 427 species: Archae - 0; Bacteria - 522; Metazoa - 526; Fungi - 534; Plants - 642; Viruses - 3; Other Eukaryotes - 180 (source: NCBI BLink).
Link
InterPro Scan - TAIR