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GT17493

CSHL Arabidopsis genetrap mutant lines

Original: GT17493

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Original: GT17493

Determination of insertion point(s)

Notice

More than one insertion position or no insertion point is expected.

  • 3 prime edge [+] show sequence

    1. Chromosome: 5; Position: 3252471 [Map]; Strand: c
      • AT5G10336.1 - [+] show detail - unknown protein; Has 30201 Blast hits to 17322 proteins in 780 species: Archa...
        Distance: -406; Region: promoter
      • AT5G10340.1 - [+] show detail - F-box family protein
        Distance: -651; Region: promoter
    Flanking Genome Sequence: GT17493 - 3-prime edge 
    TTTACCGACC GTTACCGACC GTTTTCATCC CTACGAGATT GCATCTGCAG 
    AAACATGGAG ATAATTCTCG GATGAGATAT CGGATCGAAG GGTAGTTAGA 
    TTCCCTGGAA AGCTAACAAC CGGGGCAATC CGTGAACATA TTAAACAAAT 
    GGGGAAGTCA ATAAATTTAT TTTACATTAT AACTGGTTTA AGGCATTTAG 
    CTATTATATT ATATTTATGG AGTGGAGGTA AGAAGACAAC ATTTTTCTAA 
    GTATTCTAGT TTGTTTTATT TATTTATTAA AGCAGTAAGT GCTTAACCTG 
    CACTATGCAT GAGCAAAAGT CTAAAAATGA TATAAAAATA TTTTGTAATA 
    GATTTGAGAT GTTTTGTTTC TCACTTTGAA TGAAAAAAAA AAACTTTTAC 
    TAAAAAAATT GTTGTCGGTT TATGTTTAAA AAATTAAAGT TGAAAATTGA 
    CCCAAAATAA ACCTACGTTT TGGATTATAG GAACCAAC

  • 5 prime edge [+] show sequence

    1. Chromosome: 2; Position: 57660 [Map]; Strand: c
      • AT2G01034.1 - [+] show detail - transposable element gene
        Distance: -9310; Region: intergenic
      • AT2G01037.1 - [+] show detail - transposable element gene
        Distance: 1045; Region: intergenic
    Flanking Genome Sequence: GT17493 - 5-prime edge 
    GCAATCTCGT TTGACATAGA ATCCTTTCTT AAGAAGACTA GTCATCTTAG 
    GGATCAATTC CCCCACAAGT CTCAACGATT CTCGAAACTA GTAGCACATC 
    TATGGATTTT CCAGCGAGTC AGGTGTCCCT AGAAGCTGAC CTCACTTCCA 
    TCGGAGCTGT CTATCGAATG TTATCCCTGC TTCTATCCAG AAGATGCGAT 
    CTTTAGAACT ACGAATCCGT CTGAATAATC CAGCTCACCA CGGGGCCGAT 
    TTCCCGACAA ATCACAGGGA ATCTCGTAAG GGTTAATACA TCTACGGATC 
    GCCCAGAGAG TCGTCTTTTC GGAGAAGTTG ACCTCGCCTT AATCGAAGAT 
    ATATGCTGAG ATATAAACGT TTACCTCAAG CAAGTGCAAC CAGTCATGAG 
    ACCCAACTCT ATAAAACCAG TCAGCTTCGG GATCGTTTTC CTTGAAAATC 
    CTGATGAACT AGGCAGTGAT ATACCTATCT ACAGGTCGGC TTCTCTGCAC 
    TCGACAAAAT TTCCCTGACA AATCCGCAGC TGTCGGAACA GCCAACTTAC 
    GAATCAAACT CCAAGC

AT2G01034.1

Model type
Transposable element gene
Short Description
transposable element gene
Computational Description
gypsy-like retrotransposon family, has a 0. P-value blast match to GB:AAD27547 polyprotein (Gypsy_Ty3-element) (Oryza sativa subsp. indica)
Link
InterPro Scan - TAIR

AT2G01037.1

Model type
Transposable element gene
Short Description
transposable element gene
Computational Description
gypsy-like retrotransposon family, has a 5.0e-229 P-value blast match to GB:AAD27547 polyprotein (Gypsy_Ty3-element) (Oryza sativa subsp. indica)
Link
InterPro Scan - TAIR

AT5G10336.1

Model type
Protein coding
Computational Description
unknown protein; Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT5G10340.1

Model type
Protein coding
Short Description
F-box family protein
Computational Description
F-box family protein; CONTAINS InterPro DOMAIN/s: F-box domain, cyclin-like (InterPro:IPR001810), F-box domain, Skp2-like (InterPro:IPR022364), F-box associated domain, type 1 (InterPro:IPR006527), F-box associated interaction domain (InterPro:IPR017451); BEST Arabidopsis thaliana protein match is: F-box and associated interaction domains-containing protein (TAIR:AT2G34280.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Link
InterPro Scan - TAIR