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GT17505

CSHL Arabidopsis genetrap mutant lines

Original: GT17505

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Original: GT17505

Determination of insertion point(s)

Notice

More than one insertion position or no insertion point is expected.

  • 3 prime edge [+] show sequence

    1. Chromosome: 1; Position: 28350950 [Map]; Strand: w
      • AT1G75510.1 - [+] show detail - Transcription initiation factor IIF, beta subunit
        Distance: -2215; Region: intergenic
      • AT1G75520.1 - [+] show detail - SHI-related sequence 5
        Distance: 612; Region: intergenic
    Flanking Genome Sequence: GT17505 - 3-prime edge 
    CGGTAGAGGT ATTTTACCGA CCGTTACCGA TTCTTTTCAT CCCTACTCAT 
    GGACAGGTTT TTACTTACAT AATATCGTGT CATTCCATCT ACATTCAACC 
    CCTGTCTACA TAATATAAGA GGTCTAACGT TAGTTATGTG GAGAACGTCA 
    TATTGTGAGT AAATACCTAA CATGTGAAAT GTTGGTGTAT ATGAATGTAA 
    ACGGATGGTA ATATAAGGTA TTTATATCAA ACTACTTCCC TGCAGAATTA 
    TCAAATTTTT AGCTATTTAA TTATTACTTG CATGGATCAT GGATGTGACT 
    ATCAGTCGTC TGTAGCTAAT CCCCATTTAC TAATTCTGTC TTACAGAATA 
    AAAACTGGTC GATGCAGTAT ATATATATAT ACGAGTGTCT GCTTCAGATA 
    TATGATGAAA CTAAGTGTGA TGTCTTTTTT CTTGTGAGAA GATATAACAA 
    TCTGTTATAT CTATGTGAGA ACTGATACTG TT

  • 5 prime edge [+] show sequence

    1. Chromosome: 3; Position: 4866701 [Map]; Strand: c
      • AT3G14490.1 - [+] show detail - Terpenoid cyclases/Protein prenyltransferases superfamily protein
        Distance: -752; Region: promoter
      • AT3G14500.1 - [+] show detail - transposable element gene
        Distance: 0; Region: exon1 (NonCoding)
    Flanking Genome Sequence: GT17505 - 5-prime edge 
    TACTTTCTCC CTGCTTCTAC GGTACTGACG CAAACGCAGG AAAGCCCAAA 
    AGCAAAGAGA ATGCATGGTT AGTCAACCCA TCTGTAAGCC GGTTAGCCTT 
    CCGATACACA TGAGACACTC GGACTATCGA GTCCTTTCTA AGAAAGCCAT 
    GACACAAGCG TACAAGGATG GACAGCGGAT TAGTTTCCTC AATTTCCTCA 
    ATCCCTGTCG TTAAAAACCC AACTACTACC TCCGAATCCA CCTCCACTTC 
    TAAACGCATA ATCTTCTTTT CCCAAGACAA ATACAACCCA TAATAAACTC 
    CTCGAAGTTC TGCTAGAGAG ATAGAGATTG AACATTGATT GTTTGGATTC 
    TCAATTAATT CGATCATATT AAATGATTGT CTAAGATTTT CCAGTGATTG 
    CTTTTAAATT TTTAATGTTT ACATATGTGC C

AT1G75510.1

Model type
Protein coding
Short Description
Transcription initiation factor IIF, beta subunit
Computational Description
Transcription initiation factor IIF, beta subunit; FUNCTIONS IN: RNA polymerase II transcription factor activity, general RNA polymerase II transcription factor activity, catalytic activity, ATP binding, ATP-dependent helicase activity; INVOLVED IN: transcription initiation from RNA polymerase II promoter, transcription from RNA polymerase II promoter; LOCATED IN: mitochondrion, transcription factor TFIIF complex; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Winged helix-turn-helix transcription repressor DNA-binding (InterPro:IPR011991), Transcription Factor IIF, Rap30/Rap74, interaction (InterPro:IPR011039), Transcription initiation factor IIF, beta subunit (InterPro:IPR003196), Transcription initiation factor IIF, beta subunit, subgroup (InterPro:IPR016640); BEST Arabidopsis thaliana protein match is: Transcription initiation factor IIF, beta subunit (TAIR:AT3G52270.1); Has 346 Blast hits to 346 proteins in 152 species: Archae - 0; Bacteria - 0; Metazoa - 130; Fungi - 128; Plants - 70; Viruses - 0; Other Eukaryotes - 18 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT1G75520.1

Model type
Protein coding
Short Description
SHI-related sequence 5
Curator Summary
A member of SHI gene family. Arabidopsis thaliana has ten members that encode proteins with a RING finger-like zinc finger motif. Despite being highly divergent in sequence, many of the SHI-related genes are partially redundant in function and synergistically promote gynoecium, stamen and leaf development in Arabidopsis.
Computational Description
SHI-related sequence 5 (SRS5); CONTAINS InterPro DOMAIN/s: Lateral Root Primordium type 1, C-terminal (InterPro:IPR006511), Zinc finger, Lateral Root Primordium type 1 (InterPro:IPR006510), Protein of unknown function DUF702 (InterPro:IPR007818); BEST Arabidopsis thaliana protein match is: SHI-related sequence 7 (TAIR:AT1G19790.2); Has 299 Blast hits to 299 proteins in 34 species: Archae - 0; Bacteria - 2; Metazoa - 11; Fungi - 2; Plants - 180; Viruses - 0; Other Eukaryotes - 104 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT3G14490.1

Model type
Protein coding
Short Description
Terpenoid cyclases/Protein prenyltransferases superfamily protein
Computational Description
Terpenoid cyclases/Protein prenyltransferases superfamily protein; FUNCTIONS IN: lyase activity, magnesium ion binding; INVOLVED IN: metabolic process; LOCATED IN: chloroplast; CONTAINS InterPro DOMAIN/s: Terpene synthase, metal-binding domain (InterPro:IPR005630), Terpenoid synthase (InterPro:IPR008949), Terpenoid cylases/protein prenyltransferase alpha-alpha toroid (InterPro:IPR008930), Terpene synthase-like (InterPro:IPR001906); BEST Arabidopsis thaliana protein match is: Terpenoid cyclases/Protein prenyltransferases superfamily protein (TAIR:AT3G14520.1); Has 1720 Blast hits to 1687 proteins in 178 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 1715; Viruses - 0; Other Eukaryotes - 5 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT3G14500.1

Model type
Transposable element gene
Short Description
transposable element gene
Computational Description
similar to RNase H domain-containing protein [Arabidopsis thaliana] (TAIR:AT5G36905.1); similar to hypothetical protein MtrDRAFT_AC139526g2v1 [Medicago truncatula] (GB:ABE80133.1); similar to Ribonuclease H [Medicago truncatula] (GB:ABE81233.1); contains InterPro domain Polynucleotidyl transferase, Ribonuclease H fold; (InterPro:IPR012337)
Link
InterPro Scan - TAIR