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GT17506

CSHL Arabidopsis genetrap mutant lines

Original: GT17506

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Original: GT17506

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 1; Position: 30037107 [Map]; Strand: c
      • AT1G79840.2 - [+] show detail - HD-ZIP IV family of homeobox-leucine zipper protein with lipid-binding START ...
        Distance: 0; Region: exon1 (CDS)
      • AT1G79840.1 - [+] show detail - HD-ZIP IV family of homeobox-leucine zipper protein with lipid-binding START ...
        Distance: -308; Region: promoter
    Flanking Genome Sequence: GT17506 - 5-prime edge 
    TCCTACTTTC TCCCTGACTT CATCCGACAA CTGAGTAGTT TAAAACATGG 
    CCAGCTACAG CATTGGCAGC CATCGATCGA CTTCATCTCT CTCGACAAGA 
    TTCGATTTTT AATATATACA TATATATATG ATGAGCAAAA TTCAAATTTG 
    AATTATGGAA AATATATCAG CCTTCCAATT TCAGCTACTA ACTTTAATAT 
    GAATTATGTT GGAATGATAT AAAGGATTGA GAAGAACTTG AACATATATA 
    CAATGAAGCC ATATTGAAAC ATGAGCAAAT TATCCGTTAA AAGTAGTACA 
    TAATGGCGTT GCTATAGATT ACTGTAGACA GGGGGGGAAG GAATGAGAAT 
    AAGAAGGAAG GGTTACAATT GCATGATTGA TTTAAGGGTA TAAAAACAAA 
    AAAGACGAAC TTCTCTGTCT CTTCTTTAAT TGAATTGTGT GTAGAGACTA 
    GAGAGAGAGA GAGAGACATA TGTGTATGTC AGATTTCTTA ATTGTTTTCT 
    CTAGAGAGAG AGAGAGTTGA CCGTTAGATA CTGAGATGGA CTCAACTAAC 
    TTTTAGCACC TAATTCTCCA ACCGCATTTT CTGC

AT1G79840.1

Model type
Protein coding
Short Description
HD-ZIP IV family of homeobox-leucine zipper protein with lipid-binding START domain
Curator Summary
Glabra 2, a homeodomain protein affects epidermal cell identity including trichomes, root hairs, and seed coat. It also down-regulates seed oil content. Expressed in atrichoblasts and required to suppress root hair development. Also expressed abundantly during early seed development. Directly regulated by WER.
Computational Description
GLABRA 2 (GL2); CONTAINS InterPro DOMAIN/s: Homeobox, conserved site (InterPro:IPR017970), Homeobox (InterPro:IPR001356), Homeodomain-like (InterPro:IPR009057), Lipid-binding START (InterPro:IPR002913), Homeodomain-related (InterPro:IPR012287); BEST Arabidopsis thaliana protein match is: Homeobox-leucine zipper family protein / lipid-binding START domain-containing protein (TAIR:AT4G21750.2); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT1G79840.2

Model type
Protein coding
Short Description
HD-ZIP IV family of homeobox-leucine zipper protein with lipid-binding START domain
Curator Summary
Glabra 2, a homeodomain protein affects epidermal cell identity including trichomes, root hairs, and seed coat. It also down-regulates seed oil content. Expressed in atrichoblasts and required to suppress root hair development. Also expressed abundantly during early seed development. Directly regulated by WER.
Computational Description
GLABRA 2 (GL2); CONTAINS InterPro DOMAIN/s: Homeobox, conserved site (InterPro:IPR017970), Homeobox (InterPro:IPR001356), Homeodomain-like (InterPro:IPR009057), Lipid-binding START (InterPro:IPR002913), Homeodomain-related (InterPro:IPR012287); BEST Arabidopsis thaliana protein match is: protodermal factor 2 (TAIR:AT4G04890.1).
Link
InterPro Scan - TAIR