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GT17518

CSHL Arabidopsis genetrap mutant lines

Original: GT17518

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Original: GT17518

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 3; Position: 3109993 [Map]; Strand: w
      • AT3G10090.1 - [+] show detail - Nucleic acid-binding, OB-fold-like protein
        Distance: 0; Region: exon1 (5UTR)
    Flanking Genome Sequence: GT17518 - 5-prime edge 
    CCTACTTTCT CCCTGCTGCG ATGGGTAGAG AGTTTTAGCG GCGATAAGAG 
    TTTTAAGAGC AGAGATCCTA GAACCCTAAT TCGAGAGACG CACCAATAAT 
    TAACTGGTTT CGTGAGAGAG GACTTATAAA AATAAAATAA TGTCGACCAA 
    AAGTCAAAAA AAACTTGACC CGGTTTTAAT AAGTGATCAG TTCAGTTAAT 
    CTCAGACCGA ACCGGTTCTT TAGTGTTTCG AAAGAAGGTG GAGCCATCTC 
    CATTCCTCTA CCACGTGTAA CCGTTATAGA TTTGTAACAA TTAAGACCTT 
    TAGATTTTGT AACGATCAAA GTTGCTAAAA AAAAAAAAAT GTCTTTGGAG 
    GACCTAAATG CTTTTTGCTA AAAGTTGGGT TAAACATCTT TTTTTTTGAA 
    CTTTTAAGGT TCCCCCTTCA CCAAAAACAT AGTTCATTTT TTTAAAAATC 
    CCAAAATTTT GAATATAAAA AAAAAATATT TGTTTTGGAG GGAAAAAAGC 
    CTTTAATTTG CCCTTAAAAA AAATTTTGTT AGAGAAAAAT TATCAAAAGG 
    GTTTTTTGGT GCCAGGTTTA AAAAAAATGG GAAATCTCGG TTGAAATATT 
    CAAAAAATTG GGTTTTTGGT TTTTATAGAG AGATTTTTCA AAAGGTTTTT 
    GAGTTGT

AT3G10090.1

Model type
Protein coding
Short Description
Nucleic acid-binding, OB-fold-like protein
Computational Description
Nucleic acid-binding, OB-fold-like protein; FUNCTIONS IN: structural constituent of ribosome; INVOLVED IN: translation, ribosome biogenesis; LOCATED IN: cytosolic small ribosomal subunit, cytosolic ribosome, ribosome, cell wall; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Nucleic acid-binding, OB-fold-like (InterPro:IPR016027), Nucleic acid-binding, OB-fold (InterPro:IPR012340), Ribosomal protein S28e (InterPro:IPR000289); BEST Arabidopsis thaliana protein match is: Nucleic acid-binding, OB-fold-like protein (TAIR:AT5G03850.1); Has 1066 Blast hits to 1066 proteins in 391 species: Archae - 235; Bacteria - 0; Metazoa - 333; Fungi - 148; Plants - 161; Viruses - 0; Other Eukaryotes - 189 (source: NCBI BLink).
Link
InterPro Scan - TAIR