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GT17544

CSHL Arabidopsis genetrap mutant lines

Original: GT17544

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Original: GT17544

Determination of insertion point(s)

  • 3 prime edge [+] show sequence

    1. Chromosome: 2; Position: 18950903 [Map]; Strand: c
      • AT2G46080.1 - [+] show detail - CONTAINS InterPro DOMAIN/s: Protein BYPASS related (InterPro:IPR008511); BEST...
        Distance: -798; Region: promoter
      • AT2G46090.1 - [+] show detail - Diacylglycerol kinase family protein
        Distance: 0; Region: exon1 (5UTR)
    Flanking Genome Sequence: GT17544 - 3-prime edge 
    TTTTACCGAC CGTTACCGAC CGTTTTCATC CCTAACGGCG ATGACCGGAG 
    CTAAATTGCG GCCATACAAT GCTACGATCC ACTTGCTGCA CTCCACTTTG 
    CCCTTTCACG GCGAAACAAC CTTCTTTCCT TAGGAAACAG CAACGTATTA 
    CCTCTGATCG CTTCACCTTT CGCGGTGGTG GTGGTGGCGA TGCCGCCGCC 
    GTCGTCTCCT CCTCCGGCCT CCGTGATCTC GTTTTCGTCG TAAATCCTCA 
    AGGTGTGTTT GCCCTTTTAC TCACTGGATG AAAAAAAACT GAGATTCGAA 
    ATTCATTGGA TTTAAAAATG ATGTTTTTAA TATGAGAATC AATCTCGATG 
    TGGAATTGAG GTTTAGTATT ATCGTCTCTT GATTCTTTTC AATGTCTTAT 
    ATATGAGTCT AGGTGCTAAT GGTAGAACAG CTAAAGAATG GAAGAAGTTG 
    CTACCTCACC TTCGATCTCG TCTTGGTAAA GACTGTAATG TGAGTTTTTG 
    ATTCACTTGC CTTTTTGTGC CCCTGTGTTA GTGATGCCAT CTCCTTTCGC 
    TTTCTTCAGT TCCTTCAACT GAGTTTACGT GT

  • 5 prime edge [+] show sequence

    1. Chromosome: 2; Position: 18950832 [Map]; Strand: c
      • AT2G46080.1 - [+] show detail - CONTAINS InterPro DOMAIN/s: Protein BYPASS related (InterPro:IPR008511); BEST...
        Distance: -727; Region: promoter
      • AT2G46090.1 - [+] show detail - Diacylglycerol kinase family protein
        Distance: -24; Region: promoter
    Flanking Genome Sequence: GT17544 - 5-prime edge 
    CTTTCTCCCT GATCGCCGTT ATCAAGTTCA TCGCGCGATT AGACACTTAC 
    AGAGACCTTC TGTTTTAGCG AGAGGCTTTT TCACAACGTT TATGGGCCGT 
    TTTTTATCTT CAAAGTTTTA AAAAGGCCTA TTTTATCTAG CACAATGGTG 
    GAGTTGTCTC AAAGTTAATA AGGTATTCAA TATCGACGTA ATTCGATTAG 
    GAATCTTTTG GGAAAAATGC CCTTTGGACC TGATGGCCCA TAAATTGAGG 
    TAGCTATACC TAATGGGCTT AAAGAAACAA GAAAAACGAT TGAGATAAAG 
    ACAGCTCTTT AGTCTTTGTC CGGATGTAAA TTAAAAGTGG GGTCCATACT 
    TTTGTCGACC GGTTTGTTCC TTGACAGCTG TCATTTGGGC TTTGAGGCCC 
    ATGTTTTACG CAATTTTCCA AGGAATTCGT TACGTAAAAC AAATAAAGTT 
    GTTATGCCTT TTAAAAAATA TTCACAGTTG CTGAAATTTT TTTGATGAGG 
    ATTTTACAAT TTTTTAAAAA GCAAAGTACT ACCAAAAATA ATAATGAATC 
    GTCAAAATTA ATTTTCGATT AAATCTTCTC AGTTTTTATT TTTAAAAGTA 
    ATAACAGGAG TCTGTAGGAC GTGGTATGTA TTAGTTAGCC GTTAGATTTG 
    GTTATAATAA TTAAAATAAA CAAAGACTAC GCCAATCGAC CAATGACTTA 
    TTTTATAATC CCACGAAATC GTCTCATTTT TGGCCCTTCG ATAAAACTTT 
    TAATTATTTT TATAGCC

AT2G46080.1

Model type
Protein coding
Computational Description
CONTAINS InterPro DOMAIN/s: Protein BYPASS related (InterPro:IPR008511); BEST Arabidopsis thaliana protein match is: Protein of unknown function (DUF793) (TAIR:AT1G01550.2); Has 153 Blast hits to 139 proteins in 20 species: Archae - 0; Bacteria - 2; Metazoa - 1; Fungi - 0; Plants - 150; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT2G46090.1

Model type
Protein coding
Short Description
Diacylglycerol kinase family protein
Curator Summary
Encodes a putative sphingosine kinase (SphK) containing the five conserved domains (C1-C5) previously identified in SphKs.
Computational Description
Diacylglycerol kinase family protein; FUNCTIONS IN: diacylglycerol kinase activity, D-erythro-sphingosine kinase activity; INVOLVED IN: activation of protein kinase C activity by G-protein coupled receptor protein signaling pathway; LOCATED IN: mitochondrion; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Diacylglycerol kinase, catalytic domain (InterPro:IPR001206), Conserved hypothetical protein CHP00147 (InterPro:IPR005218); BEST Arabidopsis thaliana protein match is: long-chain base (LCB) kinase 1 (TAIR:AT5G23450.2); Has 6078 Blast hits to 6077 proteins in 1657 species: Archae - 15; Bacteria - 4829; Metazoa - 327; Fungi - 124; Plants - 145; Viruses - 0; Other Eukaryotes - 638 (source: NCBI BLink).
Link
InterPro Scan - TAIR