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GT17549

CSHL Arabidopsis genetrap mutant lines

Original: GT17549

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Original: GT17549

Determination of insertion point(s)

  • 3 prime edge [+] show sequence

    1. Chromosome: 4; Position: 146291 [Map]; Strand: c
      • AT4G00335.1 - [+] show detail - RING-H2 finger B1A
        Distance: 0; Region: intron1 (5UTR)
      • AT4G00335.3 - [+] show detail - RING-H2 finger B1A
        Distance: 0; Region: intron1 (5UTR)
      • AT4G00335.2 - [+] show detail - RING-H2 finger B1A
        Distance: 0; Region: intron1 (5UTR)
    Flanking Genome Sequence: GT17549 - 3-prime edge 
    TTCTTAAGAC AAGAACTACT GGTAGACTTG CGTATCAATG ATGTTACCAA 
    CTTTGACGGC TATTGTGTCG TGTTTGATTA AAATTGGTTG ACGTGTGAAA 
    TGCTTTTGCT CCAGTCACTG TTTTCATTGC AACTTGCACT GAATCCTACA 
    GGTTGATTTA GAATAAAGGT TCAAGATTCA GCTATAGACG GGACATTACA 
    CATAGCATAA GGAACATTCC CATACCTATC TGTTTCTTAT GGCATAACTT 
    TGGCATCCGA TCAACTTTTT CTTCTGGCCA TTTCGCTTAC TAACACTGTA 
    ATAATCACTT GTTATTGGGG TTTCTCAAGT CTGCTTTGAT TAATCTTGTT 
    TCGTAATG

AT4G00335.1

Model type
Protein coding
Short Description
RING-H2 finger B1A
Computational Description
RING-H2 finger B1A (RHB1A); FUNCTIONS IN: zinc ion binding; INVOLVED IN: N-terminal protein myristoylation; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, RING-type (InterPro:IPR001841), Zinc finger, C3HC4 RING-type (InterPro:IPR018957); BEST Arabidopsis thaliana protein match is: RING/U-box superfamily protein (TAIR:AT5G41350.1); Has 5425 Blast hits to 5419 proteins in 245 species: Archae - 0; Bacteria - 0; Metazoa - 1535; Fungi - 417; Plants - 2568; Viruses - 6; Other Eukaryotes - 899 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT4G00335.2

Model type
Protein coding
Short Description
RING-H2 finger B1A
Computational Description
RING-H2 finger B1A (RHB1A); FUNCTIONS IN: zinc ion binding; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, RING-type (InterPro:IPR001841), Zinc finger, C3HC4 RING-type (InterPro:IPR018957); BEST Arabidopsis thaliana protein match is: RING/U-box superfamily protein (TAIR:AT5G41350.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT4G00335.3

Model type
Protein coding
Short Description
RING-H2 finger B1A
Computational Description
RING-H2 finger B1A (RHB1A); FUNCTIONS IN: zinc ion binding; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, RING-type (InterPro:IPR001841), Zinc finger, C3HC4 RING-type (InterPro:IPR018957); BEST Arabidopsis thaliana protein match is: RING/U-box superfamily protein (TAIR:AT5G41350.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).
Link
InterPro Scan - TAIR