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GT17550

CSHL Arabidopsis genetrap mutant lines

Original: GT17550

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Original: GT17550

Determination of insertion point(s)

Notice

More than one insertion position or no insertion point is expected.

  • 3 prime edge [+] show sequence

    1. Chromosome: 3; Position: 16707107 [Map]; Strand: c
      • AT3G45540.1 - [+] show detail - RING/U-box protein with C6HC-type zinc finger
        Distance: 0; Region: exon2 (CDS)
    Flanking Genome Sequence: GT17550 - 3-prime edge 
    TTTTACCGAC CGTTACCGAC CGTTTTCATC CCTGACTTAT CAACACAAAA 
    CATCTGATTA GCACTAATAT CATCATCTAA ACAGATACTG CAAGTCCTTT 
    TGCGGGTAGC CTTGGCTTGG CGAGTACGAT TCACAAGCCT GCTAATTTCA 
    GAAACTATTG CTTCCCATGC TAGCTTATAA GCATCTCTGA TACTATTTCA 
    GATCCCAAAA GCCGGAAAGA TCGACGCCAA TTGATTTTGT ATACATGGCA 
    TATCTATTCG CAAAGATCAG GAATCAGCGA GCAGACAGTG GTAACGAATT 
    CAACGAAAAG GTTTGAGAAG AAGGATCTCT TAACTTCTTA TCAATGTGAA 
    CTAAAAAAGC CACACCATGC GAGTCTCTTT GAAATAGAGA TCGAACTGTA 
    CGAAAAAGAT AAGAGAGTTC ATGAGCC

  • 5 prime edge [+] show sequence

    1. Chromosome: 5; Position: 611318 [Map]; Strand: w
      • AT5G02700.1 - [+] show detail - F-box/RNI-like superfamily protein
        Distance: 0; Region: exon1 (CDS)
    Flanking Genome Sequence: GT17550 - 5-prime edge 
    TACTTTCTCC CTGGATATCT GGATATCTGT AAGTCTTGGA GTATGTGAAA 
    TCCCTAACGA ACACAGACAG ATTTTGCACA TTGCGGGAGA GAGCAAACTC 
    GATCCAGCTA TCAACCTAGG GTACAGTGTT GCTGTTAAGG TCCATAACAA 
    GTTTGAAACT AGTGATTATG GGAGCCGTGT AGGAAGTTAG GGTTTGGTTC 
    ATCTCCACTC GACTAGAGTG TAATGTCGAG ACAAGGTGTC TCGCACCATA 
    CATGCCTCCA TCGTCGGGAT AAGACGGAAG TTCTCATGGC CAAATCGGTG 
    GGAATAAAGG AGAGAATATG GTGAAGGATA TCATCTGGCA TATAGTTGAT 
    GAAATCTGCA CCATTGATTA TTCGTTGGAT TCTGCGGTGG CTACGATGTT 
    GTCGTCGGCC CCGTCTCTCT CGCCTTTTCG CCATCTAACG CAGATGTCTT 
    TAGGTTTTCT TTTGTCTACA GAAGAATTAC GTTTAATATT TATATACAAT 
    CGGCCTCCCA TGGAAAAGAC GGCAAAAGCT ATGAATCGAC TAATGACCCT 
    TTTAAGCATT ACCCTTTAAC GGCCCAAAAT GTATTTATAA GATTATGGCC 
    GGGCCTAGTA AGACAAGTTT ACTTTAACCT TAACTTTAAC ATTACCAGTA 
    CCCCAAAATG CCCAAAATTA ATGTATCCTC AATCACTTGT GTTACTTTTA 
    CAAGTATTGA ATTATCTGTA ACGTAATCCC TTAAATAATG TACGTATTAG 
    TCTACTGTCC AAATACCGCG CTTTTGA

AT3G45540.1

Model type
Protein coding
Short Description
RING/U-box protein with C6HC-type zinc finger
Computational Description
RING/U-box protein with C6HC-type zinc finger; FUNCTIONS IN: zinc ion binding; CONTAINS InterPro DOMAIN/s: Zinc finger, RING-type, conserved site (InterPro:IPR017907), Zinc finger, C6HC-type (InterPro:IPR002867), Zinc finger, RING-type (InterPro:IPR001841); BEST Arabidopsis thaliana protein match is: RING/U-box protein with C6HC-type zinc finger (TAIR:AT3G45580.1); Has 2900 Blast hits to 2879 proteins in 213 species: Archae - 0; Bacteria - 2; Metazoa - 1213; Fungi - 549; Plants - 696; Viruses - 0; Other Eukaryotes - 440 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT5G02700.1

Model type
Protein coding
Short Description
F-box/RNI-like superfamily protein
Computational Description
F-box/RNI-like superfamily protein; CONTAINS InterPro DOMAIN/s: F-box domain, cyclin-like (InterPro:IPR001810), F-box domain, Skp2-like (InterPro:IPR022364); BEST Arabidopsis thaliana protein match is: F-box/RNI-like superfamily protein (TAIR:AT3G28410.1); Has 2196 Blast hits to 2168 proteins in 31 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 8; Plants - 2186; Viruses - 0; Other Eukaryotes - 2 (source: NCBI BLink).
Link
InterPro Scan - TAIR