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Mutant Lines
GT17562

GT17562

CSHL Arabidopsis genetrap mutant lines

Original: GT17562

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Original: GT17562

Determination of insertion point(s)

Notice

More than one insertion position or no insertion point is expected.

3 prime edge [+] show sequence

Chromosome: 3; Position: 16707107 [Map]; Strand: c
- AT3G45540.1 - [+] show detail - RING/U-box protein with C6HC-type zinc finger
  Distance: 0; Region: exon2 (CDS)

TTTTACCGAC CGTTACCGAC CGTTTTCATC CCAGACTTAT CAACACAAAA 
CATCTGATTA GCACTAATAT CATCATCTAA ACAGATACTG CAAGTCCTTT 
TGCGGGTAGC CTTGGCTTGG CGAGTACGAT TCACAAGCCT GCTAATTTCA 
GAAACTATTG CTTCCCTTGC TAGCTTATAA GCATCTCTGA TACTATTTCA 
GATCCCAAAA GCCGGAAAGA TCGACGCCAA TTGTTTTTGT ATACATGGCA 
TATTATTCGC AAAGATCAGG AATCAGCGAG CAACAGTGGT AACGAATTCA 
AGGAAAAGGT TTGAGAAGAA GGTTCTCTTA ACTTTTTATA AATGTGAACT 
AAAAAAGCCA GAGCATGCGA GTCTCTTTGA AATAGAGATC GAACTGTACG 
AAAAAGATAA GAGAGTTAAT GAGCCTAAAG AAAAACCCTA AGCAAAAAC

5 prime edge [+] show sequence

Chromosome: 1; Position: 27434008 [Map]; Strand: w
- AT1G72900.1 - [+] show detail - Toll-Interleukin-Resistance (TIR) domain-containing protein
  Distance: 226; Region: intergenic
- AT1G72910.1 - [+] show detail - Toll-Interleukin-Resistance (TIR) domain-containing protein
  Distance: -1606; Region: intergenic

TTTCTCCCTG GAAAGTGTCG TTCCATTTTT GTTCCGAGTG TATGAAACAA 
CATATAGAGG TGAGGCTACT CTAGGGAAGT GTGATTAGAT GTCCTCGTTA 
CCACTGCAAG TCTAAGCTGA CTTTTGGAAG CTGTGTTAAT CTTTTGTCAC 
CTAAACAAAT AAAGATATGG CAACAAAGGA TCAAAGAGGA TTCGATTCCC 
ATAAAGAAAA TAATTTAATG CCCAAACCCG AGGTGTTCGG CCTTAATGTC 
GGTAAACGAG CTCTCTAAAT ATACTAAGAA CATCCACAAT GGTTGACTCT 
TAGCAAACAA ACAATAAAAA ATTTATATGA TTTAAATATT AGATGAGTAA 
ACTTAAGCCA ATTGTCTCTT AGTTAAGAAA CAATTGGTCT AGATTTCACC 
AAATTTAAGA AACCTATAAT TAAAAAATAT TATTTATCTA TATTTACACT 
TTAGTTTTGT TTAAGAGACT TAGGCTTAGA AACCTCCATT GAGGATACTC 
TAGAGAAGCT GGAGTTAGGA GAAACTTCTC TAAATCTACT AAAGAAGATA 
CTAGTGTAAG GAGATAATGC TTAGAATGCA GTCAAATATT TTGCATCAAC 
TGTAAAGTTA CATGGCATAG TAACTTGTCG TGCGACGATT ACAGGAGATT 
GGGTCCAAAT GCTACAGCTG ATGATATAAC GCTTAAAGCT TTAGCAAATA 
AAAAAATGTG GCATCAATGT GAAAAGTGCA ACTACATGAT CGAACTTTCT 
AAAGGATGCA TCAAAGTAAC TTGCATGTAT ATCATCAAAG CAACATTAAA 
ATGGGAAGTT CCATACCCCA T

AT1G72900.1

Model type: Protein coding
Short Description: Toll-Interleukin-Resistance (TIR) domain-containing protein
Computational Description: Toll-Interleukin-Resistance (TIR) domain-containing protein; FUNCTIONS IN: transmembrane receptor activity, ATP binding; INVOLVED IN: signal transduction, defense response, apoptosis, innate immune response; LOCATED IN: intrinsic to membrane; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 10 growth stages; CONTAINS InterPro DOMAIN/s: NB-ARC (InterPro:IPR002182), Toll-Interleukin receptor (InterPro:IPR000157); BEST Arabidopsis thaliana protein match is: Toll-Interleukin-Resistance (TIR) domain-containing protein (TAIR:AT1G72940.1); Has 4486 Blast hits to 4351 proteins in 152 species: Archae - 0; Bacteria - 27; Metazoa - 4; Fungi - 0; Plants - 4454; Viruses - 0; Other Eukaryotes - 1 (source: NCBI BLink).
Link: InterPro Scan - TAIR

AT1G72910.1

Model type: Protein coding
Short Description: Toll-Interleukin-Resistance (TIR) domain-containing protein
Computational Description: Toll-Interleukin-Resistance (TIR) domain-containing protein; FUNCTIONS IN: transmembrane receptor activity, ATP binding; INVOLVED IN: signal transduction, defense response, apoptosis, innate immune response; LOCATED IN: intrinsic to membrane; CONTAINS InterPro DOMAIN/s: NB-ARC (InterPro:IPR002182), Toll-Interleukin receptor (InterPro:IPR000157); BEST Arabidopsis thaliana protein match is: Toll-Interleukin-Resistance (TIR) domain-containing protein (TAIR:AT1G72900.1); Has 4443 Blast hits to 4310 proteins in 184 species: Archae - 0; Bacteria - 120; Metazoa - 0; Fungi - 0; Plants - 4322; Viruses - 0; Other Eukaryotes - 1 (source: NCBI BLink).
Link: InterPro Scan - TAIR

AT3G45540.1

Model type: Protein coding
Short Description: RING/U-box protein with C6HC-type zinc finger
Computational Description: RING/U-box protein with C6HC-type zinc finger; FUNCTIONS IN: zinc ion binding; CONTAINS InterPro DOMAIN/s: Zinc finger, RING-type, conserved site (InterPro:IPR017907), Zinc finger, C6HC-type (InterPro:IPR002867), Zinc finger, RING-type (InterPro:IPR001841); BEST Arabidopsis thaliana protein match is: RING/U-box protein with C6HC-type zinc finger (TAIR:AT3G45580.1); Has 2900 Blast hits to 2879 proteins in 213 species: Archae - 0; Bacteria - 2; Metazoa - 1213; Fungi - 549; Plants - 696; Viruses - 0; Other Eukaryotes - 440 (source: NCBI BLink).
Link: InterPro Scan - TAIR