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GT17563

CSHL Arabidopsis genetrap mutant lines

Original: GT17563

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Original: GT17563

Determination of insertion point(s)

Notice

More than one insertion position or no insertion point is expected.

  • 3 prime edge [+] show sequence

    1. Chromosome: 5; Position: 3374452 [Map]; Strand: w
      • AT5G10690.1 - [+] show detail - pentatricopeptide (PPR) repeat-containing protein / CBS domain-containing pro...
        Distance: 0; Region: exon11 (CDS)
    Flanking Genome Sequence: GT17563 - 3-prime edge 
    AAACGGTAGA GGTATTTTAC CGACCGTTAC CGACCGTTTT CATCCCTACT 
    TCCAAGACGA GCACCATCAA TTCCAAATGA GTTGCTACTG ATACAGATTT 
    AGTTCTTTCA ATATATTCAC TTTTGTCAGA AAGAAAATGA ACAAGAAACA 
    AAACCTTGTT CCCTAACCTT GTTCTTCTTC GAGTTCTCTT GCAGCCTATG 
    CTGTTGGAGA TTCCTTCTTC CCTTGCACCC CTTCCTTCTT TGTTCCTTCC 
    TCTGGTAATT CTTCTATTTG AGCCTTTGTT TCGGCTGTTT CTTCTTTCAC 
    TCTGCTGCTT TCGCTCTCTT CCTCTTTAAC TTCTGCTTCT TCCTGTTCCT 
    CTTGTTTACT TTTTTCGAAA TTCACAGCTT CATTCATATC CTGTAGTAGT 
    AGCAACTGTC TCGCTATTTT CCTCATCATC AACTTTCTTG CTATCAAACT 
    CCTCATAGAT CTCAATCTTC TTGCTATCGA CCAACACTTC TCGTCTCTTC 
    TGCCTAAACC CGCGGAACAA ATCACTCGTC TCATCCAAAA CCGAAACATA 
    CTCAGGCTGG TGGCTCTCAA ACTTATACTC CTCAATGATC TTCAACTCTT 
    TTGCCTCAGC TTCTTCTTCT CTGTCCTATC GAGATTCTTA AGCTCTTCTC 
    TTAATAGCCG AACCGCGTTG TTTTGCATAT ACTCCCATTG TTTCACGAGG 
    TTGGTTAGTT GAGAGGAGCC TTGCTGAGTC AAACTCAATA GTTCTGGTAA 
    CCGTGTCAAA TCTGCAATGG TCGGTTTCTC TTCGATTGTG ACTTCTTTCA 
    ACATGCCTCG ACTAGGCGAT CTATGTG

  • 5 prime edge [+] show sequence

    1. Chromosome: 5; Position: 2978076 [Map]; Strand: c
      • AT5G09590.1 - [+] show detail - mitochondrial HSO70 2
        Distance: 0; Region: exon6 (CDS)
      • AT5G09600.3 - [+] show detail - succinate dehydrogenase 3-1
        Distance: -866; Region: promoter
    Flanking Genome Sequence: GT17563 - 5-prime edge 
    CTTTCTCCCT GCTTGGAAGG CGCACACTCA GAGGATCGGA TTGTGATCTG 
    TTGTACTTTA CCAGTCGTCT TGTCCTTGGC GGAAACAGTG ACAATGCCAT 
    TGGCATCAAT GTCAAATGTC ACTTCGATCT GAGGGACTCC TCTTGGAGAT 
    GGTGGAATGC CAACTAGATC AAATTCTCCC AAGAGCTTGT TGTCTGTTGC 
    CATTTCACGC TCACCTTGAA GCACCCTGAT CCCAACTTGA GTCTGATTAT 
    CGGCTGCAGT TGAGAACACC TTCAAGAGAA TGAAACGAGA CAATCAACAT 
    TTTAGTAAAA ACTTGACAAA AACAATGGTA GCTTTGGATG GCTCATAAAT 
    TAGTATATAT CACAGGAATG TGCTTTCATG ACCCCTGTTA AAGAAGAACC 
    AGAGAGATCT CGAGCGTACA AAGAGAATCG AAGAGATTGT GATTGCAAAA 
    GTGTTACTTA TATAGAGAAG AGGAGATTCT GTGTTCGTAG TTGGAATAGG 
    AATCGCAGGA GTTATAGAGA TAAGAGCTCC GGTCCCAAGT CATTTTCGAT 
    TTGGAGGACT CGCATAGAGT TTTAAATTTT TTAATTTTTT TAACAAACGC 
    AAAAATTAGC CTGATTAAAG TTATTGATAG AAATTGCATT AAAAATTAAA 
    ACATCATCAC TGCAAATAAA ACAATATTTT AACTCATCTT TTC

AT5G09590.1

Model type
Protein coding
Short Description
mitochondrial HSO70 2
Curator Summary
heat shock protein 70 (Hsc70-5); nuclear
Computational Description
mitochondrial HSO70 2 (MTHSC70-2); FUNCTIONS IN: ATP binding; INVOLVED IN: protein folding, response to cadmium ion, response to salt stress, response to virus, response to heat; LOCATED IN: mitochondrion, cell wall, plasma membrane, chloroplast, mitochondrial matrix; EXPRESSED IN: 26 plant structures; EXPRESSED DURING: 16 growth stages; CONTAINS InterPro DOMAIN/s: Heat shock protein 70, conserved site (InterPro:IPR018181), Chaperone DnaK (InterPro:IPR012725), Heat shock protein Hsp70 (InterPro:IPR001023), Heat shock protein 70 (InterPro:IPR013126); BEST Arabidopsis thaliana protein match is: mitochondrial heat shock protein 70-1 (TAIR:AT4G37910.1); Has 35090 Blast hits to 34955 proteins in 4871 species: Archae - 160; Bacteria - 17405; Metazoa - 3531; Fungi - 1665; Plants - 1246; Viruses - 305; Other Eukaryotes - 10778 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT5G09600.3

Model type
Protein coding
Short Description
succinate dehydrogenase 3-1
Curator Summary
Encodes one of the membrane anchor subunits of the mitochondrial respiratory complex II. The protein is encoded by the nuclear genome but is imported into the mitochondrion. There are two genes that encode this protein, the other is SDH3-2.
Computational Description
succinate dehydrogenase 3-1 (SDH3-1); CONTAINS InterPro DOMAIN/s: Succinate dehydrogenase/Fumarate reductase, transmembrane subunit (InterPro:IPR000701); BEST Arabidopsis thaliana protein match is: succinate dehydrogenase 3-2 (TAIR:AT4G32210.1).
Link
InterPro Scan - TAIR

AT5G10690.1

Model type
Protein coding
Short Description
pentatricopeptide (PPR) repeat-containing protein / CBS domain-containing protein
Computational Description
pentatricopeptide (PPR) repeat-containing protein / CBS domain-containing protein; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885), Cystathionine beta-synthase, core (InterPro:IPR000644); BEST Arabidopsis thaliana protein match is: Pentatricopeptide repeat (PPR) superfamily protein (TAIR:AT1G12775.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Link
InterPro Scan - TAIR