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GT17572

CSHL Arabidopsis genetrap mutant lines

Original: GT17572

Phenotypes

Morphological phenotypes

Original description

  • semi-sterile (unconfirmed)
Anatomical entity
/structure development stage		 Phenotypes
seed (PO:0009010)
  • present in fewer numbers in organism (PATO:0001997)

Original: GT17572

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 3; Position: 2344450 [Map]; Strand: c
      • AT3G07340.1 - [+] show detail - basic helix-loop-helix (bHLH) DNA-binding superfamily protein
        Distance: -980; Region: promoter
    Flanking Genome Sequence: GT17572 - 5-prime edge 
    CCTACTTTCT CCCTGGATCC GAGATCTGAT CCGAATTTGA ATGTAGCTGT 
    ATGGGAGAAA AGCCGAACGT GTATATTATC CTTTTGACGG CGCTTAAGGT 
    TATCTTATAC TAGTATATCT CAGATTTTTC TTACGTAAAA AGTCGGTGAT 
    ATGTTATTGA AACGTGTCAC CACAAACGTA AACCTATGAT CTGGGACATG 
    TTTGAAACCA ATGAACTTTT CAATTAAACT CGGACATCTA TTTGTATCTT 
    TCTGTAAACT TAAATATTAG ATATATCTAT TGATGTATTA TGTTGATTTT 
    CTTATTCTTA GACGACTAGC AATATACGTA ATATGGTCAA TTAGAAATTT 
    AGAAATCTCA CCAAGTCAAG CACTAATCTA TACAGAACGG CAAATCCTTC 
    TAAGTTCTAC TTCTAACCAA ACCGTATGAT CCACATGACC ATATGAGAGT 
    AATTTCCAAG AGACTATCAT GATGCAAGAA CGAACATAAA ACCATCTAAC 
    TAAAAATTTA GCTCACTTAC ATGCATGAAC AAACCAAATT GCCTCATTGA 
    AACTGCCTAC TTGAAACATG TTATAAAATC AAGATTTTTC CTTGTCTTTT 
    TCTTGATTCG AACAAAGAAA GAGTTAAACA TGTTGACATA CAAATCAACA 
    AAAGAACCGG CGATGGTTAA GGAACTTCGA CAAGGGAACC CATTCGTCAA 
    AAGTAGTTTG TTATTCGTTT ACCGGTTTTT GATATTAGTA CCAGATTTGT 
    TTTTGACATC TTAAAGAACG TTAAGATTGT TTCGTACTA

AT3G07340.1

Model type
Protein coding
Short Description
basic helix-loop-helix (bHLH) DNA-binding superfamily protein
Computational Description
basic helix-loop-helix (bHLH) DNA-binding superfamily protein; FUNCTIONS IN: DNA binding, sequence-specific DNA binding transcription factor activity; INVOLVED IN: regulation of transcription; LOCATED IN: nucleus, chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 11 growth stages; CONTAINS InterPro DOMAIN/s: Helix-loop-helix DNA-binding domain (InterPro:IPR001092), Helix-loop-helix DNA-binding (InterPro:IPR011598); BEST Arabidopsis thaliana protein match is: basic helix-loop-helix (bHLH) DNA-binding superfamily protein (TAIR:AT5G48560.1); Has 2639 Blast hits to 2308 proteins in 133 species: Archae - 0; Bacteria - 4; Metazoa - 62; Fungi - 52; Plants - 2177; Viruses - 0; Other Eukaryotes - 344 (source: NCBI BLink).
Link
InterPro Scan - TAIR