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GT17576

CSHL Arabidopsis genetrap mutant lines

Original: GT17576

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Original: GT17576

Determination of insertion point(s)

  • 3 prime edge [+] show sequence

    1. Chromosome: 2; Position: 181796 [Map]; Strand: w
      • AT2G01420.1 - [+] show detail - Auxin efflux carrier family protein
        Distance: 0; Region: exon2 (CDS)
      • AT2G01420.2 - [+] show detail - Auxin efflux carrier family protein
        Distance: 0; Region: exon2 (CDS)
    Flanking Genome Sequence: GT17576 - 3-prime edge
    TACCGACCGT TACCGACCGT TTTCATCCCT AGTGGAGAGG GAGAAAGAGA 
    GATAGAGAAA GCTACAGCAG GGCTGAATAA AATGGGGTCT AATTCCACGG
    CGGAGCTAGA GGCGGCTGGT GGAGATGGCG GCGGCAACAA CGGAACACAT
    ATGCCGCCGA CAAGTGTGAT GACACGACTG ATATTGATAA TGGTGTGGAG
    AAAGCTGATC AGAAACCCAA ACACGTACTC CAGTCTAATC GGTCTCATAT
    GGGCTCTTGT TGCTTACCGG TCAGTGAGTC CAATCATTTT CTTACTTACA
    GATTTTATGG ATAAATGTTA TAATAAGAAA AGGAAATAAT ATAATCATCT
    ATGCATGGAA TAATTGTAGT GGGAACTAAT AATGAGTATG GGTTGTTTTT
    GGAAGCAGGT GGCATGTGGC TATGCCCAAA ATATTACAAC AATCCATCTC
    CATACTCTCA GATGCTGGTC TTGGAATGGC TATGTTCAGC TTAGGTAAAC
    ACTAACCTTG CTTCATGCAA ATCTAGACTT GTTTTGATGA TGATCTAATC
    TTTAAAGTTG GGTCCAAATT TGTTCTCATC TTATCTGTTA AAAAAGATTC
    ATTTAATGCA AAGTGGGTCT GTGTGTTTAA TTAGTCGTAG TTGTCCAGCT
    TGTAATTGGT AAAAGTCATA TAAACTGTAC AAAGCACTTA CCCAAAGAGA
    GAATCCTGAC CCTC

AT2G01420.1

Model type
Protein coding
Short Description
Auxin efflux carrier family protein
Curator Summary
Encodes a putative auxin efflux carrier that is localized in developing and mature root meristems. It is involved in the maintenance of embryonic auxin gradients. A role for AtPIN4 in generating a sink for auxin below the quiescent center of the root meristem that is essential for auxin distribution and patterning is proposed. In the root, PIN4 is detected around the quiescent center and cells surrounding it, and localizes basally in provascular cells. PIN4 expression is upregulated in brassinosteroid-insensitive mutant (PMID 16141452).
Computational Description
PIN-FORMED 4 (PIN4); FUNCTIONS IN: auxin:hydrogen symporter activity, transporter activity; INVOLVED IN: root development, pattern specification process, auxin polar transport; LOCATED IN: endomembrane system, integral to membrane; EXPRESSED IN: 27 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Auxin efflux carrier, subgroup (InterPro:IPR014024), Auxin efflux carrier (InterPro:IPR004776); BEST Arabidopsis thaliana protein match is: Auxin efflux carrier family protein (TAIR:AT1G70940.1); Has 1811 Blast hits to 1602 proteins in 498 species: Archae - 31; Bacteria - 1046; Metazoa - 12; Fungi - 10; Plants - 485; Viruses - 0; Other Eukaryotes - 227 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT2G01420.2

Model type
Protein coding
Short Description
Auxin efflux carrier family protein
Curator Summary
Encodes a putative auxin efflux carrier that is localized in developing and mature root meristems. It is involved in the maintenance of embryonic auxin gradients. A role for AtPIN4 in generating a sink for auxin below the quiescent center of the root meristem that is essential for auxin distribution and patterning is proposed. In the root, PIN4 is detected around the quiescent center and cells surrounding it, and localizes basally in provascular cells. PIN4 expression is upregulated in brassinosteroid-insensitive mutant (PMID 16141452).
Computational Description
PIN-FORMED 4 (PIN4); FUNCTIONS IN: auxin:hydrogen symporter activity, transporter activity; INVOLVED IN: root development, pattern specification process, auxin polar transport; LOCATED IN: endomembrane system, integral to membrane; EXPRESSED IN: 27 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Auxin efflux carrier, subgroup (InterPro:IPR014024), Auxin efflux carrier (InterPro:IPR004776); BEST Arabidopsis thaliana protein match is: Auxin efflux carrier family protein (TAIR:AT1G70940.1); Has 1823 Blast hits to 1616 proteins in 502 species: Archae - 31; Bacteria - 1046; Metazoa - 18; Fungi - 10; Plants - 487; Viruses - 2; Other Eukaryotes - 229 (source: NCBI BLink).
Link
InterPro Scan - TAIR