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GT17584

CSHL Arabidopsis genetrap mutant lines

Original: GT17584

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Original: GT17584

Determination of insertion point(s)

  • 3 prime edge [+] show sequence

    1. Chromosome: 4; Position: 40814 [Map]; Strand: w
      • AT4G00110.1 - [+] show detail - UDP-D-glucuronate 4-epimerase 3
        Distance: -625; Region: promoter
    Flanking Genome Sequence: GT17584 - 3-prime edge 
    AAACGGTAGA GGTATTTTAC CGACCGTTAC CGACCGTTTT CATCCCTATT 
    CAAGTGTGCC TTTCCACATA CATTACCCGG ACTCACTCAC TAGTCACTAT 
    AAATCAATAT CGTTATGTTT TTATCTTACA ATAAGTGAAT TTGAAGAATA 
    AAATAGAGCT TTGATGGATA TTACTATTAT ATATGCGGTC TAGTAGATGC 
    GTGTTGTTAT TATATTATTC CTTGAAGATT ACTCTTTGCT TTTTTGTACC 
    CCATGGATAA ATGTGCCTTG GTATTAAGTT GCAAATTTGA TTTAATTAAT 
    CCCTAAACAT GTTACTAGTT AGAGTTTGCA CGTGACGATC TTGGGCAGCA 
    CCTAAACATG TATTTGTGTG CGTAATTTTG TAATAAGTAA GTGCATCGAG 
    TTTGATGAAT CAGTATTTGA ATGATAATTC GATGAAAGTA CATTTGTTGC 
    CATAAGAACC CTAAAGTAAG ATCCATAAGG ATGATGAAAG CTTCATTAAT 
    AATAAAAGTA AAGTTAATCT ACCTATAATA ACTAAATTAA TCAAGAGTGA 
    AACTAAATCT GTAGAAAATT AAATGTAAGA GATAGAGACT AGAGTGATTA 
    ATTAAGCTTT GACTATCCCT TAAATCCTCA TAATCTCTTC TTGCTCTTTG

  • 5 prime edge [+] show sequence

    1. Chromosome: 4; Position: 40902 [Map]; Strand: w
      • AT4G00110.1 - [+] show detail - UDP-D-glucuronate 4-epimerase 3
        Distance: -713; Region: promoter
      • AT4G00114.1 - [+] show detail
        Distance: 0; Region: exon1 (NonCoding)
    Flanking Genome Sequence: GT17584 - 5-prime edge 
    TGTCTTTATG ATGTGTAAAA GAGAGCTTAG CTTAACAAAA GTCTTTAGCG 
    GCTGCAATAA CCGTATCCAC GGTGAGTCCA AATTTCCTGT AGAGCACATT 
    GGCTGGTGCA CTTGCTCCAA AACTGTCTAC GCCGATGGCT TTTCTTTTGG 
    AGCCAACCAT CTTCTCCCAC CCAAAGGTCG ACCCTGCTTC AATGCTCACT 
    CTTGCTGAAA CCTCTCAAGG TAACACACTT TCTTTGTATT CTTCTCTTTG 
    TACAACAAAC AGCTCCCAAC TCACCAATGA CACTACTCTC ACTGCTTTTC 
    TTTCATCTCA CTCGA

AT4G00110.1

Model type
Protein coding
Short Description
UDP-D-glucuronate 4-epimerase 3
Curator Summary
Encodes a putative membrane-anchored UDP-D-glucuronate 4-epimerase.
Computational Description
UDP-D-glucuronate 4-epimerase 3 (GAE3); FUNCTIONS IN: UDP-glucuronate 4-epimerase activity, catalytic activity; INVOLVED IN: cellular metabolic process, carbohydrate metabolic process, nucleotide-sugar metabolic process, metabolic process; LOCATED IN: membrane; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: NAD-dependent epimerase/dehydratase (InterPro:IPR001509), NAD(P)-binding domain (InterPro:IPR016040), Nucleotide sugar epimerase (InterPro:IPR008089); BEST Arabidopsis thaliana protein match is: UDP-D-glucuronate 4-epimerase 2 (TAIR:AT1G02000.1); Has 43399 Blast hits to 43389 proteins in 2971 species: Archae - 792; Bacteria - 26013; Metazoa - 773; Fungi - 412; Plants - 1214; Viruses - 37; Other Eukaryotes - 14158 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT4G00114.1

Model type
Pseudogene
Curator Summary
pseudogene of transketolase
Link
InterPro Scan - TAIR