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GT17602

CSHL Arabidopsis genetrap mutant lines

Original: GT17602

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Original: GT17602

Determination of insertion point(s)

  • 3 prime edge [+] show sequence

    1. Chromosome: 4; Position: 17643738 [Map]; Strand: w
      • AT4G37550.1 - [+] show detail - Acetamidase/Formamidase family protein
        Distance: 0; Region: exon1 (CDS)
      • AT4G37550.2 - [+] show detail - Acetamidase/Formamidase family protein
        Distance: 0; Region: exon1 (CDS)
      • AT4G37550.3 - [+] show detail - Acetamidase/Formamidase family protein
        Distance: 0; Region: exon1 (CDS)
    Flanking Genome Sequence: GT17602 - 3-prime edge 
    AACGGTAGAG GTATTTTACC GACCGTTACC GACCGTTTTC ATCCCTGCTG 
    CCATGGCTTC TTCTTCAAAT CCACCTTCAC CACTACTCTT GGACTCAGTG 
    GAGCCATCAA AGATCAAAAC CCAATAAGTA CAGTGATCTC TCTATTCACG 
    TTTTCTCTCT GTATAACTCT TTTGTTTTCT CTCTTTCTTT TGTCCTTGAT 
    ACAGTGAAAA GAGTGATCAT TGGTTCTTGC AGATTCCTTA TCTATCATAA 
    CAAAAAGACA GTAAAAAAAG ATTGCAGATT TCACCATATC TTGAGACGTT 
    TTCACTTTTT CAAAAAGTGT GACTTTTTGT TTTTTTCTGA ACCAAGTGGA 
    TAGTATCAAA AGACATGTGT CTCCCTCTGT GTGTGGCAAT GCATGCATGA 
    CCAAAAAGTT GAAAATGACA TTTTCTTGAC TTATGTTATG AAAAGAATCA 
    GAGAGTCTTA AGCTCAATTG CTTCTCCTTC

  • 5 prime edge [+] show sequence

    1. Chromosome: 4; Position: 17643835 [Map]; Strand: w
      • AT4G37550.1 - [+] show detail - Acetamidase/Formamidase family protein
        Distance: 0; Region: exon1 (CDS)
      • AT4G37550.2 - [+] show detail - Acetamidase/Formamidase family protein
        Distance: 0; Region: exon1 (CDS)
      • AT4G37550.3 - [+] show detail - Acetamidase/Formamidase family protein
        Distance: 0; Region: exon1 (CDS)
    Flanking Genome Sequence: GT17602 - 5-prime edge 
    TAGATGGCAT CCGGACATAC CACCAGTAGC AGAGGTCAAG GCTGGTGAGT 
    TTTTCCGGGT AGAAATGATT GATGCAATGG GAGGTGTTAT CAAAGACAAT 
    GACTCTGCAA GCGATATCAA GAACCTAGTC CTAACTACTG TAAGTGGGTT 
    TTGTGAGAAA CATGTGAAAA ATCAATAATG AAACAATGAG TTTACTTTTA 
    AAGAAAAACA ACTTTTGGTG ATATATTGTA CAGACTCATC ACCTAAGTGG 
    GCCGATTAGG GTTGTAGATG AGGAAGGTGT TGCAGCTAAA GCAGGTGATC 
    TTCTTGCTGT TGAGATATGC AACTTGGGTC CTCTTCCAGG AGATGAATGG 
    GGATTCACTG GTTCGTTTGA TAGAGAGAAT GGTGGCGGTT TCTTGACTGA 
    CCATTTCCCT TGTGCGACCA AAGCTATTTG GTACTTTGAA GGGATCTATG 
    CCTACTCTCC TCAGATTCCT GGTAAGAAGA AAACAATTCA ATGTCTTCTA 
    TCAAGAAACT TAGTAGCATA ACCATGTAGC TTTCCTTGTT ATGATTCGTT 
    CTGTTGAATA TTCAAATGCT AATATTACCC CATCATGGCA GGAGTACGAT 
    TTCCGGGTTT GACACACCCA GGAGTCATTG GCACTGCACC ATCGAATGAA 
    CTCTTGAGAA TATGGAATGA TAGGGAAAGA CAATTAGAAG AAAGTGGTGT 
    TGAGTCCCTA ACACTATGTG AG

AT4G37550.1

Model type
Protein coding
Short Description
Acetamidase/Formamidase family protein
Computational Description
Acetamidase/Formamidase family protein; FUNCTIONS IN: formamidase activity, hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in linear amides; INVOLVED IN: metabolic process; LOCATED IN: vacuole; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Acetamidase/Formamidase (InterPro:IPR004304); BEST Arabidopsis thaliana protein match is: Acetamidase/Formamidase family protein (TAIR:AT4G37560.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT4G37550.2

Model type
Protein coding
Short Description
Acetamidase/Formamidase family protein
Computational Description
Acetamidase/Formamidase family protein; FUNCTIONS IN: formamidase activity, hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in linear amides; INVOLVED IN: metabolic process; LOCATED IN: vacuole; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Acetamidase/Formamidase (InterPro:IPR004304); BEST Arabidopsis thaliana protein match is: Acetamidase/Formamidase family protein (TAIR:AT4G37560.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT4G37550.3

Model type
Protein coding
Short Description
Acetamidase/Formamidase family protein
Computational Description
Acetamidase/Formamidase family protein; FUNCTIONS IN: formamidase activity, hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in linear amides; INVOLVED IN: metabolic process; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Acetamidase/Formamidase (InterPro:IPR004304); BEST Arabidopsis thaliana protein match is: Acetamidase/Formamidase family protein (TAIR:AT4G37560.1).
Link
InterPro Scan - TAIR