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GT17624

CSHL Arabidopsis genetrap mutant lines

Original: GT17624

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Original: GT17624

Determination of insertion point(s)

  • 3 prime edge [+] show sequence

    1. Chromosome: 1; Position: 20081345 [Map]; Strand: w
      • AT1G53790.1 - [+] show detail - F-box and associated interaction domains-containing protein
        Distance: 0; Region: exon1 (CDS)
      • AT1G53790.2 - [+] show detail - F-box and associated interaction domains-containing protein
        Distance: 0; Region: exon1 (CDS)
      • AT1G53800.2 - [+] show detail - unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein ...
        Distance: -354; Region: promoter
      • AT1G53800.1 - [+] show detail - unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein ...
        Distance: -385; Region: promoter
    Flanking Genome Sequence: GT17624 - 3-prime edge 
    TTTTACCGAC CGTTACCGAC CGTTTTCATC CCTAACGAAG ATGATATCGC 
    TCTCGTCAAG ACTTATGTAA GTGTACCCTT TTAGAACCCT AAATTTTGCT 
    GTATTTTGTT TCTTTGCGAA CCAGTTTGAT GTTTTCTCAT GAGTAATTTC 
    GAGCTAATTG CTATTTTATG ATCCTATTTA GATCATTTTT GTGCTTATAT 
    GACTAACTAG CTTCGGGTGA CTCTGCCTCA CTGTTTGAAT AAGTCGTCCA 
    AGTGAAAAAA ACGTTCATAG TTATACTTGG TTTGATATGT TGCGTCTCCA 
    TATGTTTTTT TGCTGACCTT GTTAAAATCT CAATCCTTCG CAGGGGTTAG 
    TGCCTTACTC TGCACCTATC AAGAAAGTGG AGAAAGAAAT TAAGGAACTC 
    ACCGAGAAGA TCAACGATCT ATGTGGTTTG TGCACACTCA AATAGTGGTG 
    TTACTTTCAT TAGTGACTTC TATTTACCGA ATGATTAAAT TGCATATACG 
    GGTAACTTGC AGGTATCAAG GAGTCTGATA CTGGTTTAGC TCCTCTCAGT 
    AAGCAAATGA TGCAAGAGGG GCAACCTCTC CAGGTGGGTT ATGTTTCCTG 
    TTTTAGATAT ATCCCGATCG ATCTCCTCAT GGATATCNTT TTCGAGAGTT 
    CCTGCAAAGT CTATAGCTAG GGTTTCGTTG CGTATCCAAA CTCTGGGAAT 
    CCATACTTTG TCGTCCTGAT TTCAAGGAGT TGTTCATGAC TATGTCTC

  • 5 prime edge [+] show sequence

    1. Chromosome: 1; Position: 20081416 [Map]; Strand: w
      • AT1G53790.1 - [+] show detail - F-box and associated interaction domains-containing protein
        Distance: 0; Region: exon1 (5UTR)
      • AT1G53790.2 - [+] show detail - F-box and associated interaction domains-containing protein
        Distance: 0; Region: exon1 (5UTR)
      • AT1G53800.2 - [+] show detail - unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein ...
        Distance: -283; Region: promoter
      • AT1G53800.1 - [+] show detail - unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein ...
        Distance: -314; Region: promoter
    Flanking Genome Sequence: GT17624 - 5-prime edge 
    CTTTCTCCCT GATCTTCGTC AAGCGGATCG TCTAAATATC TCTCACCATT 
    TTTTATTTTT TTTTCGGATT TTGATCGGAG ATTTGAGATG TGAGAAGAAG 
    AAATCGAATT ACACCAACAA GAGTACCAAC TTTGTCCGAG TTATTAAGGT 
    CTAGTAAGTA AGGGCCACGT TAGGTGCCTT GTTGGAGAGG CCAGAGAAAA 
    TAATACCACG TGTGAATTGG GCTATGAAAC GCAGCCCATT AGCCCAATAT 
    GGAGTGATCC GGGTCGGGTC ATTAGAGCGA GCCGGGTCTC GTTATCCATC 
    GCCTCCCTGG TTGCTGCGTC AAAGCCAGAC ACAAGTATCT TCGTTGAAAT 
    TTGCTTTTTG TGTGGCTTAT CCTTGTCTGT CAAATTCCTG CAAAAACCCT 
    CGCCTCTCTC AGACAGTAAG AGGAACATAT TTCCTTAATG TATTGTTCCG 
    TATAATCTTA CAAGACATCC TGGTTGGTGT TGCAGAGAAG AGTGTTTCAA 
    AGTTTCTTCC TTTTTCGTTT TCCTGGTCTG AATGAGCTCC CAATGCCTTC 
    TTTAGGTACC TTTTCTGGTA AAGTTTCCAG ATATTTACCT CTTAATTTTC 
    TGGGTTTGTG TTTGGTTACT GTTTAGAATT CTACTTCAGT ATTGAGACTC 
    TCTTTCTTCT CAATTTTGTT TCTTTTCTAT TGGATTTCAT CATTCTTGAG 
    TATCAATTAT TTGCATTTGC AATCTTGGTC TAAATGCGTA TAAGAAAAGA 
    CTAGTGATT

AT1G53790.1

Model type
Protein coding
Short Description
F-box and associated interaction domains-containing protein
Computational Description
F-box and associated interaction domains-containing protein; CONTAINS InterPro DOMAIN/s: F-box domain, cyclin-like (InterPro:IPR001810), F-box domain, Skp2-like (InterPro:IPR022364), F-box associated domain, type 3 (InterPro:IPR013187), F-box associated interaction domain (InterPro:IPR017451); BEST Arabidopsis thaliana protein match is: F-box and associated interaction domains-containing protein (TAIR:AT2G31470.1); Has 1824 Blast hits to 1754 proteins in 226 species: Archae - 0; Bacteria - 0; Metazoa - 126; Fungi - 137; Plants - 1479; Viruses - 0; Other Eukaryotes - 82 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT1G53790.2

Model type
Protein coding
Short Description
F-box and associated interaction domains-containing protein
Computational Description
F-box and associated interaction domains-containing protein; FUNCTIONS IN: endopeptidase activity; INVOLVED IN: ubiquitin-dependent protein catabolic process; LOCATED IN: proteasome core complex, alpha-subunit complex; EXPRESSED IN: 15 plant structures; EXPRESSED DURING: LP.06 six leaves visible, LP.04 four leaves visible, 4 anthesis, petal differentiation and expansion stage, D bilateral stage; CONTAINS InterPro DOMAIN/s: F-box domain, cyclin-like (InterPro:IPR001810), F-box domain, Skp2-like (InterPro:IPR022364), F-box associated domain, type 3 (InterPro:IPR013187), Proteasome, alpha-subunit, conserved site (InterPro:IPR000426), F-box associated interaction domain (InterPro:IPR017451); BEST Arabidopsis thaliana protein match is: F-box and associated interaction domains-containing protein (TAIR:AT2G31470.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT1G53800.1

Model type
Protein coding
Computational Description
unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G53250.1); Has 1136 Blast hits to 882 proteins in 242 species: Archae - 2; Bacteria - 216; Metazoa - 257; Fungi - 77; Plants - 87; Viruses - 4; Other Eukaryotes - 493 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT1G53800.2

Model type
Protein coding
Computational Description
unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G53250.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).
Link
InterPro Scan - TAIR