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GT17664

CSHL Arabidopsis genetrap mutant lines

Original: GT17664

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Original: GT17664

Determination of insertion point(s)

  • 3 prime edge [+] show sequence

    1. Chromosome: 1; Position: 2932846 [Map]; Strand: c
      • AT1G09090.1 - [+] show detail - respiratory burst oxidase homolog B
        Distance: 0; Region: exon1 (CDS)
      • AT1G09090.2 - [+] show detail - respiratory burst oxidase homolog B
        Distance: 0; Region: exon1 (CDS)
    Flanking Genome Sequence: GT17664 - 3-prime edge
    GTAGAGGTAT TTTACCGACC GTTACCGACC GTTTTCATCC CTAACGTCGA 
    GATCACACTC GAAGTGCGAG ACGAAACCAT CAACACAATG AAGGCCAAGG
    CGACACTTCG TTCGGTTCTT TCCGGGAGGC TGAAAACGAT GGTTAAGTCG
    CTATCGTTTG CTTCACGCCG GCTCGACCGT AGTAAGTCGT TCGGTGCTAT
    GTTTGCTCTT CGAGGGTTGA GGTTCATTGC CAAAAACGAC GCCGTTGGTA
    GAGGCTGGGA TGAGGTTGCA ATGAGGTTTG ATAAGTTGGC CGTTGAAGGG
    AAACTCCCTA AATCCAAATT TGGACATTGC ATAGGTAAAC AAAAAAACTT
    TAAATAATAT ACCTTTTTTG GTTTCATTTT TTTCTCTCTG TAATTTCACT
    GCAATACTCA ACTTGTTTCT CATATACAGT TTTGTTTTTT TATTACTTTT
    TTTTTAACTG AATTTTAAAA GAATTATTTC AACTAAATAG GAATGGTTGA
    ATCTAGCGAA TT

AT1G09090.1

Model type
Protein coding
Short Description
respiratory burst oxidase homolog B
Curator Summary
NADPH-oxidase AtrbohB plays a role in seed after-ripening. Major producer of superoxide in germinating seeds. AtrbohB pre-mRNA is alternatively spliced in seeds in a hormonally and developmentally regulated manner. ABA caused accumulation of AtrbohB-
Computational Description
respiratory burst oxidase homolog B (RBOHB); FUNCTIONS IN: NAD(P)H oxidase activity; INVOLVED IN: response to heat, seed germination, defense response; LOCATED IN: integral to membrane, membrane; EXPRESSED IN: embryo, root; EXPRESSED DURING: imbibition; CONTAINS InterPro DOMAIN/s: Ferredoxin reductase-type FAD-binding domain (InterPro:IPR017927), Cytochrome b245, heavy chain (InterPro:IPR000778), EF-hand-like domain (InterPro:IPR011992), Ferric reductase-like transmembrane component, N-terminal (InterPro:IPR013130), NADPH oxidase Respiratory burst (InterPro:IPR013623), EF-HAND 2 (InterPro:IPR018249), FAD-binding 8 (InterPro:IPR013112), Riboflavin synthase-like beta-barrel (InterPro:IPR017938); BEST Arabidopsis thaliana protein match is: respiratory burst oxidase homologue D (TAIR:AT5G47910.1); Has 1619 Blast hits to 1551 proteins in 238 species: Archae - 2; Bacteria - 81; Metazoa - 636; Fungi - 280; Plants - 489; Viruses - 0; Other Eukaryotes - 131 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT1G09090.2

Model type
Protein coding
Short Description
respiratory burst oxidase homolog B
Curator Summary
NADPH-oxidase AtrbohB plays a role in seed after-ripening. Major producer of superoxide in germinating seeds. AtrbohB pre-mRNA is alternatively spliced in seeds in a hormonally and developmentally regulated manner. ABA caused accumulation of AtrbohB-
Computational Description
respiratory burst oxidase homolog B (RBOHB); FUNCTIONS IN: NAD(P)H oxidase activity; INVOLVED IN: response to heat, seed germination, defense response; LOCATED IN: integral to membrane, membrane; EXPRESSED IN: embryo, root; EXPRESSED DURING: imbibition; CONTAINS InterPro DOMAIN/s: Ferredoxin reductase-type FAD-binding domain (InterPro:IPR017927), Cytochrome b245, heavy chain (InterPro:IPR000778), EF-hand-like domain (InterPro:IPR011992), Ferric reductase-like transmembrane component, N-terminal (InterPro:IPR013130), Ferric reductase, NAD binding (InterPro:IPR013121), NADPH oxidase Respiratory burst (InterPro:IPR013623), EF-HAND 2 (InterPro:IPR018249), FAD-binding 8 (InterPro:IPR013112), Riboflavin synthase-like beta-barrel (InterPro:IPR017938); BEST Arabidopsis thaliana protein match is: respiratory burst oxidase homologue D (TAIR:AT5G47910.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).
Link
InterPro Scan - TAIR