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GT17666

CSHL Arabidopsis genetrap mutant lines

Original: GT17666

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Original: GT17666

Determination of insertion point(s)

  • 3 prime edge [+] show sequence

    Not mapped

    Flanking Genome Sequence: GT17666 - 3-prime edge 
    TTACCGACGT TTTCTCCCT

  • 3 prime edge [+] show sequence

    1. Chromosome: 3; Position: 1958294 [Map]; Strand: c
      • AT3G06430.1 - [+] show detail - Tetratricopeptide repeat (TPR)-like superfamily protein
        Distance: 0; Region: exon1 (5UTR)
      • AT3G06433.1 - [+] show detail - pseudogene, expressed protein
        Distance: -607; Region: promoter
    Flanking Genome Sequence: GT17666 - 3-prime edge 
    TAGAGGTATT TTACCGACCG TTACCGACCG TTTTCATCCC TGATTCCCGT 
    CGATACTCAT TTCGGTTGGA TATGGTAAAA TACCGGTTTA TATAACCGAA 
    CCGGAAACAC ATTTGATCCG TTCAAATCCC TTAAAAACCG GATCGTATTT 
    TTAAATATGA TCACATAATT GATCATTTAA AAATAATACG AGGCTATTTT 
    TTTGGTGTTC AAAAAGATAA AAATAATAAT ATGAAGCTCG CATCTCTGTA 
    AGTATATATA TATATAAAAC TAAAAGGAAA ATCACGAATT ATAGTATCAA 
    AAATAGATTT AATAATAAAA ATAAGGATTG GTGACTGGTG CACAAAAGGT 
    GGTAACAAAC AAACACAATC TTGACGAAAT TCTATAGAAA TATCCCAGAG 
    AAAAAA

  • 5 prime edge [+] show sequence

    1. Chromosome: 3; Position: 1958226 [Map]; Strand: c
      • AT3G06430.1 - [+] show detail - Tetratricopeptide repeat (TPR)-like superfamily protein
        Distance: 0; Region: exon1 (CDS)
      • AT3G06433.1 - [+] show detail - pseudogene, expressed protein
        Distance: -675; Region: promoter
    Flanking Genome Sequence: GT17666 - 5-prime edge 
    ACTTTCTCCC TGATTATCCG TAAACGAGTG ACAGTGAGGT GTGAAGGAAG 
    AAGACGATGG CGTCAATGTC TCTCTCGTTT TCTTCTTCGC TATGTTCATC 
    CAGAATCCCC GAAGGTAAGC GTAGGTTTCG TCACAGAGAT GTGGGCATCG 
    TTAGATGCGT TTTGGCTGCT TCGAAATCTT CTCCGGGAAG TGTTACGAAG 
    AAGAGGCTTT GGAAAGACGG CGAATTCCCC GGAATCACGG AGCCGGTTAA 
    TCAGAGAAGA ACTCCGATAA AGAATGTGAA GAAGAAACTT GACAGGAGAA 
    GCAAAGCTAA CGGATGGGTT AACACCGTCA CTGAAACTTT GTCCGATCTC 
    ATCGCCAAAA AGCAGTGGTT ACAAGCTCTC GAGGTATTTC GATTTTCTCT 
    CTTCTCGTTC ATGTTTGATT GAATTTGAAC TCAATTTTGA ATCACGAAGT 
    ATAATTTAGC TGAAAGATGA TTTTGATTGA ATTGGGTATT TTGTTGATGA 
    TCTTAGGTTT TTGATATGTT GAGGGAACAA ACATTTTATC AACCAAAGGA 
    AGGAACTTAC ATGAAGCTG

AT3G06430.1

Model type
Protein coding
Short Description
Tetratricopeptide repeat (TPR)-like superfamily protein
Computational Description
embryo defective 2750 (EMB2750); INVOLVED IN: pollen tube development, embryo development ending in seed dormancy; LOCATED IN: chloroplast; CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885); BEST Arabidopsis thaliana protein match is: Tetratricopeptide repeat (TPR)-like superfamily protein (TAIR:AT3G53170.1); Has 31867 Blast hits to 12007 proteins in 283 species: Archae - 3; Bacteria - 31; Metazoa - 288; Fungi - 376; Plants - 30037; Viruses - 0; Other Eukaryotes - 1132 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT3G06433.1

Model type
Pseudogene
Curator Summary
pseudogene of nodulin MtN3 family protein
Computational Description
pseudogene, expressed protein
Link
InterPro Scan - TAIR