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GT17681

CSHL Arabidopsis genetrap mutant lines

Original: GT17681

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Original: GT17681

Determination of insertion point(s)

Notice

More than one insertion position or no insertion point is expected.

  • 3 prime edge [+] show sequence

    1. Chromosome: 5; Position: 2981286 [Map]; Strand: w
      • AT5G09610.1 - [+] show detail - pumilio 21
        Distance: 0; Region: exon1 (CDS)
    Flanking Genome Sequence: GT17681 - 3-prime edge 
    GTAGAGGTAT TTTACCGACC GTTACCGACC GTTTTCATCC CTACCTTGAA 
    GCACCCTGAT CCCAACTTGA GTCTGATTAT CGGCTGCAGT TGAGAACACC 
    TTCAAGAGAA TGAAACGAGA CAATCAACAT TTTAGTAAAA ACTTGACAAA 
    AACAATGGTA GCTTTGGATG GCTCATAAAT TAGTATATAT CACAGGAATG 
    TGCTTTCATG ACCCCTGTTA AAGAAGAACC AGAGAGATCT CGAGCGTACA 
    AAGAGAATCG AAGAGATTGT GATTGCAAAA GTGTTACTTA TATAGAGAAG 
    AGGAGATTCT GTGTTCGTAG TTGGAATAGG AATCGCAGGA GTTATAGAGA 
    TAAGAGCTCC GGTCCCAAGT CATTTTCGAT TTGGAGGACT CGCATAGAGT 
    TTTAAATTTT TTAATTTTTT TAACAAACGC AAAAATTAGC CTGATTAAAG 
    TTATTGATAG AAATTGCATT AAAAATTAAA ACATCATCAC TGCAAATAAA 
    ACAATATTTT AACTCATCTT TTCCTGAAAT TGAAGTTGAC AAATTTCATG 
    AAGAAAACTT GTAGCAAAAA GAGTAACGTA GCAACAGAAC TTTGGTAAAC 
    ATTTATTACA TCATTCAAAA AAGGTCTGAG AACAAAGAAA AGCAACAAAC 
    ATACCCCCAA AAAAG

  • 5 prime edge [+] show sequence

    1. Chromosome: 5; Position: 3374602 [Map]; Strand: c
      • AT5G10690.1 - [+] show detail - pentatricopeptide (PPR) repeat-containing protein / CBS domain-containing pro...
        Distance: 0; Region: exon11 (CDS)
    Flanking Genome Sequence: GT17681 - 5-prime edge 
    CCTACTTTCT CCCTGCTTAA GGTGAGCGTG AAATGGCAAC AGACAACAAG 
    CTCTTGGGAG AATTTGATCT AGTTGGCATT CCACCATCTC CAAGAGGAGT 
    CCCTCAGATC GAAGTGACAT TTGACATTGA TGCCAATGGC ATTGTCACTG 
    TTTCCGCCAA GGACAAGACG ACTGGTAAAG TACAACAGAT CACAATCCGA 
    TCCTCTGAGT GTTGCGCCTT CCAAGACGAG CACCATCAAT TCCAAATGAG 
    TTGCTACTGA TACAGATTTA GTTCTTTCAA TATATTCACT TTTGTCAGAA 
    AGAAAATGAA CAAGAAACAA AACCTTGTTC CCTAACCTTG TTCTTCTTCG 
    AGTTCTCTTG CAGCCTATGC TGTTGGAGAT TCCTTCTTCC CTTGCACCCC 
    TTCCTTCTTT GTTCCTTCCT CTGGTAATTC TTCTATTTGA GCCTTTGTTT 
    CGGCTGTTTC TTCTTTCACT CTGCTGCTTT CGCTCTCTTC CTCTTTAACT 
    TCTGCTTCTT CCTGTTCCTC TTGTTTACTT TTTTCGAAAT TCACAGCTTC 
    ATTCATATCT GTAGTAGTAG CAACTGTCTC GCTATTTTCC TCATCATCAA 
    CTTTCTTGCT ATCAAACTCC TCATAGATCT CAATCTTCTT GCTATCGACC 
    AACACTTCTC GTCTCTTCTG CCTAAACCCG CGGAACAAAT CACTCGTCTC 
    ATCCAAAACC GAAACATACT CAGGCTGGTG GCTCTCAAAC TTA

AT5G09610.1

Model type
Protein coding
Short Description
pumilio 21
Curator Summary
Encodes a member of the Arabidopsis Pumilio (APUM) proteins containing PUF domain (eight repeats of approximately 36 amino acids each). PUF proteins regulate both mRNA stability and translation through sequence-specific binding to the 3' UTR of target mRNA transcripts.
Computational Description
pumilio 21 (PUM21); FUNCTIONS IN: RNA binding, binding; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Pumilio RNA-binding repeat (InterPro:IPR001313), Armadillo-like helical (InterPro:IPR011989), Armadillo-type fold (InterPro:IPR016024); BEST Arabidopsis thaliana protein match is: pumilio 16 (TAIR:AT5G59280.1); Has 4825 Blast hits to 2764 proteins in 231 species: Archae - 2; Bacteria - 5; Metazoa - 477; Fungi - 433; Plants - 446; Viruses - 4; Other Eukaryotes - 3458 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT5G10690.1

Model type
Protein coding
Short Description
pentatricopeptide (PPR) repeat-containing protein / CBS domain-containing protein
Computational Description
pentatricopeptide (PPR) repeat-containing protein / CBS domain-containing protein; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885), Cystathionine beta-synthase, core (InterPro:IPR000644); BEST Arabidopsis thaliana protein match is: Pentatricopeptide repeat (PPR) superfamily protein (TAIR:AT1G12775.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Link
InterPro Scan - TAIR