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GT17705

CSHL Arabidopsis genetrap mutant lines

Original: GT17705

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Original: GT17705

Determination of insertion point(s)

Notice

More than one insertion position or no insertion point is expected.

  • 3 prime edge [+] show sequence

    1. Chromosome: 3; Position: 3564602 [Map]; Strand: c
      • AT3G11380.1 - [+] show detail - Pentatricopeptide repeat (PPR) superfamily protein
        Distance: 0; Region: exon1 (CDS)
    Flanking Genome Sequence: GT17705 - 3-prime edge 
    TGAAAACGGT AGAGGTTTTT ACCGACCGTT ACCGACCGTT TTCATCCCTA 
    GCTAGGGTTG CTCTTGAGAC CTTCACCGTA CAACTCGATG ACATCACTCT 
    ATAGCTCTCT CGGAAACAGA GATAAAGTCA ATGAGATTCT TCGAGAGATG 
    AAGGAGAACA ACGTTGAGCT CGATAATGTC ACCGTGAACA ACGCTTTGCG 
    AGTATACGCT GCTGTATCTG ATGTAGCGAC AATGGACAAG TTTCTAGCTG 
    ATAGGAAAGA GATTACAAGG CTTGATGGGC TCACAATGCT TGCGATGGCA 
    AAGGCTTATG TGAGAGACGG TTCTAAACAA AAGGCTAGGA GGATGCTTCA 
    AGAAACAGAG GAATGGTTGG GTCATGACTA TAAGGAACTC ATGAGCCTAT 
    ATGGTGAAGC AGGAGAGATA GAAGATGTTC ACCGTGTATA GGACAAGTAC 
    AAGGCGACAA GACAGAAGGA TAATGAAGAA TTTCGAACTT TGATTGGTTC 
    TCTCTTGAAG CTTGGTGATA CCAAAGGAGC AGAGAAGATA TACTACCATG 
    AGTGTGAGT

  • 5 prime edge [+] show sequence

    1. Chromosome: 3; Position: 23038602 [Map]; Strand: w
      • AT3G62260.1 - [+] show detail - Protein phosphatase 2C family protein
        Distance: 0; Region: exon4 (CDS)
      • AT3G62260.2 - [+] show detail - Protein phosphatase 2C family protein
        Distance: 0; Region: exon4 (CDS)
    Flanking Genome Sequence: GT17705 - 5-prime edge 
    ATTCCTCAAG CTACAGATAA GCTTCGGGCG AAAGACTAAA ACACCTTCTC 
    TTCTCCAATG GCACCACCGG CTTGTCCCCT CTGTCCATTG TGATGAAACA 
    TACCACCACC GCAGTTAAAT TATCAAATGA GTTCCGCCCC AGAGCCTCCA 
    TCACCAGCTC TCGCGCACAT CTTGTTGGAT

AT3G11380.1

Model type
Protein coding
Short Description
Pentatricopeptide repeat (PPR) superfamily protein
Computational Description
Pentatricopeptide repeat (PPR) superfamily protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: mitochondrion; CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885); BEST Arabidopsis thaliana protein match is: Tetratricopeptide repeat (TPR)-like superfamily protein (TAIR:AT1G28020.1); Has 4044 Blast hits to 2539 proteins in 107 species: Archae - 0; Bacteria - 6; Metazoa - 8; Fungi - 2; Plants - 3964; Viruses - 0; Other Eukaryotes - 64 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT3G62260.1

Model type
Protein coding
Short Description
Protein phosphatase 2C family protein
Computational Description
Protein phosphatase 2C family protein; FUNCTIONS IN: protein serine/threonine phosphatase activity, catalytic activity; INVOLVED IN: protein amino acid dephosphorylation; LOCATED IN: protein serine/threonine phosphatase complex; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 12 growth stages; CONTAINS InterPro DOMAIN/s: Protein phosphatase 2C, manganese/magnesium aspartate binding site (InterPro:IPR000222), Protein phosphatase 2C-related (InterPro:IPR001932), Protein phosphatase 2C (InterPro:IPR015655), Protein phosphatase 2C, N-terminal (InterPro:IPR014045); BEST Arabidopsis thaliana protein match is: Protein phosphatase 2C family protein (TAIR:AT1G48040.1); Has 7561 Blast hits to 7526 proteins in 871 species: Archae - 12; Bacteria - 1200; Metazoa - 1621; Fungi - 783; Plants - 2603; Viruses - 9; Other Eukaryotes - 1333 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT3G62260.2

Model type
Protein coding
Short Description
Protein phosphatase 2C family protein
Computational Description
Protein phosphatase 2C family protein; FUNCTIONS IN: protein serine/threonine phosphatase activity, catalytic activity; INVOLVED IN: protein amino acid dephosphorylation; LOCATED IN: protein serine/threonine phosphatase complex; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 12 growth stages; CONTAINS InterPro DOMAIN/s: Protein phosphatase 2C, manganese/magnesium aspartate binding site (InterPro:IPR000222), Protein phosphatase 2C-related (InterPro:IPR001932), Protein phosphatase 2C (InterPro:IPR015655), Protein phosphatase 2C, N-terminal (InterPro:IPR014045); BEST Arabidopsis thaliana protein match is: Protein phosphatase 2C family protein (TAIR:AT1G48040.1); Has 7565 Blast hits to 7530 proteins in 876 species: Archae - 12; Bacteria - 1215; Metazoa - 1621; Fungi - 781; Plants - 2594; Viruses - 9; Other Eukaryotes - 1333 (source: NCBI BLink).
Link
InterPro Scan - TAIR