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GT17709

CSHL Arabidopsis genetrap mutant lines

Original: GT17709

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Original: GT17709

Determination of insertion point(s)

  • 3 prime edge [+] show sequence

    1. Chromosome: 3; Position: 2945390 [Map]; Strand: w
      • AT3G09590.1 - [+] show detail - CAP (Cysteine-rich secretory proteins, Antigen 5, and Pathogenesis-related 1 ...
        Distance: 0; Region: exon1 (CDS)
    Flanking Genome Sequence: GT17709 - 3-prime edge 
    TAGAGGTATT TACCGACCGT TACCGACCGT TTTCATCCCT TCTCCACACC 
    ATCTGCGTGT AATGGCCGCA CATCTTTCCC GGTGCGCACG TGTTTGTTTT 
    CACGTCGTAG TTAAACCTTT CCTCAAACCA TCTCGTCACC ACTTTCTCCG 
    GCGACCACGT CTTCTTACGC CGGTGCCAGA AAATGTTCTC ACCGTAAGGC 
    CCACCTGAAT GTATCATACT GCAATCGGAC TTACGTTGTT TAGCCCATTT 
    ATCAGCGAAT CGGGCCAGGT CTCTGTCCCA TCCGAGCGTT GGCACCCCTG 
    AAGAAACACG TGCATCGTTG TGCGCTTGTA GAAATTC

  • 5 prime edge [+] show sequence

    1. Chromosome: 3; Position: 2945460 [Map]; Strand: w
      • AT3G09590.1 - [+] show detail - CAP (Cysteine-rich secretory proteins, Antigen 5, and Pathogenesis-related 1 ...
        Distance: 0; Region: exon1 (CDS)
      • AT3G09600.1 - [+] show detail - Homeodomain-like superfamily protein
        Distance: -946; Region: promoter
      • AT3G09600.2 - [+] show detail - Homeodomain-like superfamily protein
        Distance: -946; Region: promoter
    Flanking Genome Sequence: GT17709 - 5-prime edge 
    ACTTTCTCCC TGGATCAGAC ACAGCCGTTG GATGCGCACG TGTGAAATGC 
    AATAACGGTC GTGGCTATCT TGTGGTGTGT GAATATGATC CACGCGGGAA 
    TTACGAAGGT GAAAGACCAT TTTGATCAAA ACAGTTAAAA TGAAAAAATT 
    GTTAGAGATT CAAAATATTT TTTCTTCTTC TAAAGTAATG AAGATGGTAT 
    ATTATTCTTG GTCCTTACAT ATATACAGCC ATGTATTGAA GAGGTATAAA 
    TTCAAATGGT TCGGAATCTT TTAATTTTAC TATATTAAAG ATCAATAATA 
    AAAAAAAACG TCGACAGCAG GGTTCGAACC TGCGCGGGCG AAGCCCAATA 
    GATTTCAAGT CTATCTCCTT AACCACTCGG ACATATCGAC TTGTTGTATT 
    TGTTTCGTAA GATTTGAATA CAAAACCGAA TTCTCTGTTG ACTAAATCGG 
    AGCTTT

AT3G09590.1

Model type
Protein coding
Short Description
CAP (Cysteine-rich secretory proteins, Antigen 5, and Pathogenesis-related 1 protein) superfamily protein
Computational Description
CAP (Cysteine-rich secretory proteins, Antigen 5, and Pathogenesis-related 1 protein) superfamily protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system, extracellular region; EXPRESSED IN: male gametophyte, pollen tube; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage; CONTAINS InterPro DOMAIN/s: Allergen V5/Tpx-1 related, conserved site (InterPro:IPR018244), Allergen V5/Tpx-1 related (InterPro:IPR001283), Ves allergen (InterPro:IPR002413), SCP-like extracellular (InterPro:IPR014044); BEST Arabidopsis thaliana protein match is: CAP (Cysteine-rich secretory proteins, Antigen 5, and Pathogenesis-related 1 protein) superfamily protein (TAIR:AT5G02730.1); Has 3024 Blast hits to 2931 proteins in 377 species: Archae - 0; Bacteria - 64; Metazoa - 1633; Fungi - 327; Plants - 888; Viruses - 0; Other Eukaryotes - 112 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT3G09600.1

Model type
Protein coding
Short Description
Homeodomain-like superfamily protein
Computational Description
Homeodomain-like superfamily protein; FUNCTIONS IN: DNA binding, sequence-specific DNA binding transcription factor activity; INVOLVED IN: in 9 processes; LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: SANT, DNA-binding (InterPro:IPR001005), Homeodomain-like (InterPro:IPR009057), Myb, DNA-binding (InterPro:IPR014778), HTH transcriptional regulator, Myb-type, DNA-binding (InterPro:IPR017930), Myb-like DNA-binding domain, SHAQKYF class (InterPro:IPR006447); BEST Arabidopsis thaliana protein match is: LHY/CCA1-like 1 (TAIR:AT5G02840.3); Has 1480 Blast hits to 1470 proteins in 124 species: Archae - 0; Bacteria - 0; Metazoa - 145; Fungi - 6; Plants - 1120; Viruses - 0; Other Eukaryotes - 209 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT3G09600.2

Model type
Protein coding
Short Description
Homeodomain-like superfamily protein
Computational Description
Homeodomain-like superfamily protein; FUNCTIONS IN: DNA binding, sequence-specific DNA binding transcription factor activity; INVOLVED IN: in 9 processes; LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: SANT, DNA-binding (InterPro:IPR001005), Homeodomain-like (InterPro:IPR009057), Myb, DNA-binding (InterPro:IPR014778), HTH transcriptional regulator, Myb-type, DNA-binding (InterPro:IPR017930), Myb-like DNA-binding domain, SHAQKYF class (InterPro:IPR006447); BEST Arabidopsis thaliana protein match is: LHY/CCA1-like 1 (TAIR:AT5G02840.2); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).
Link
InterPro Scan - TAIR