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GT17710

CSHL Arabidopsis genetrap mutant lines

Original: GT17710

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Original: GT17710

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    Not mapped

    Flanking Genome Sequence: GT17710 - 5-prime edge 
    CCTCCTACTT TCATCCCTGG CCCTCAATTT CAT

  • 5 prime edge [+] show sequence

    1. Chromosome: 3; Position: 1996781 [Map]; Strand: w
      • AT3G06483.1 - [+] show detail - pyruvate dehydrogenase kinase
        Distance: -4037; Region: intergenic
      • AT3G06490.1 - [+] show detail - myb domain protein 108
        Distance: -6612; Region: intergenic
    Flanking Genome Sequence: GT17710 - 5-prime edge 
    CATGATCACG AGCAACTCAC GTGATGTACT GATCAAGATA CATAACCAAC 
    GTATATAAAA ATAATTTAGA AATGGAGCTT GAGAGAATTG GATTAAGGTA 
    ATGAGCAAGT ATCAAATAAC AAATATCTTG TGATGGAAAC TGGAAAGCAG 
    CGATGTATGA ACAAATCTGA CGACCAAACC TATGTTATAA TATACC

AT3G06483.1

Model type
Protein coding
Short Description
pyruvate dehydrogenase kinase
Curator Summary
Pyruvate dehydrogenase kinase (PDK) specifically phosphorylates the E1α subunit of the pyruvate dehydrogenase complex (PDC) on a Ser residue using ATP as a phosphate donor. PDK is a unique type of protein kinase having a His-kinase-like sequence but Ser-kinase activity. Site-directed mutagenesis and structural analysis indicate that PDK belongs to the GHKL superfamily.
Computational Description
pyruvate dehydrogenase kinase (PDK); FUNCTIONS IN: ATP binding, pyruvate dehydrogenase (acetyl-transferring) kinase activity, histidine phosphotransfer kinase activity; INVOLVED IN: signal transduction, peptidyl-histidine phosphorylation, phosphorylation; LOCATED IN: mitochondrion; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Signal transduction histidine kinase, core (InterPro:IPR005467), Branched-chain alpha-ketoacid dehydrogenase kinase/Pyruvate dehydrogenase kinase, mitochondrial (InterPro:IPR018955), ATPase-like, ATP-binding domain (InterPro:IPR003594), Signal transduction histidine kinase-related protein, C-terminal (InterPro:IPR004358); Has 1925 Blast hits to 1799 proteins in 531 species: Archae - 0; Bacteria - 712; Metazoa - 467; Fungi - 468; Plants - 102; Viruses - 0; Other Eukaryotes - 176 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT3G06490.1

Model type
Protein coding
Short Description
myb domain protein 108
Curator Summary
putative transcription factor MYB108 (MYB108) mRNA,
Computational Description
myb domain protein 108 (MYB108); CONTAINS InterPro DOMAIN/s: SANT, DNA-binding (InterPro:IPR001005), Homeodomain-like (InterPro:IPR009057), Myb, DNA-binding (InterPro:IPR014778), HTH transcriptional regulator, Myb-type, DNA-binding (InterPro:IPR017930), Homeodomain-related (InterPro:IPR012287), Myb transcription factor (InterPro:IPR015495); BEST Arabidopsis thaliana protein match is: myb domain protein 78 (TAIR:AT5G49620.1); Has 8634 Blast hits to 8004 proteins in 467 species: Archae - 0; Bacteria - 0; Metazoa - 730; Fungi - 415; Plants - 5744; Viruses - 4; Other Eukaryotes - 1741 (source: NCBI BLink).
Link
InterPro Scan - TAIR