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GT17755

CSHL Arabidopsis genetrap mutant lines

Original: GT17755

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Original: GT17755

Determination of insertion point(s)

  • 3 prime edge [+] show sequence

    1. Chromosome: 3; Position: 1958248 [Map]; Strand: w
      • AT3G06430.1 - [+] show detail - Tetratricopeptide repeat (TPR)-like superfamily protein
        Distance: 0; Region: exon1 (5UTR)
      • AT3G06433.1 - [+] show detail - pseudogene, expressed protein
        Distance: -653; Region: promoter
    Flanking Genome Sequence: GT17755 - 3-prime edge
    AAACGGTAGA GGTATTTTAC CGACCGTTAC CGACCGTTTT CATCCCTAAG 
    GAAGAAGACG ATGGCGTCAA TGTCTCTCTC GTTTTCTTCT TCGCTATGTT
    CATCCAGAAT CCCCGAAGGT AAGCGTAGGT TTCGTCACAG AGATGTGGGC
    ATCGTTAGAT GCGTTTTGGC TGCTTCGAAA TCTTCTCCGG GAAGTGTTAC
    GAAGAAGAGG CTTTGGAAAG ACGGCGAATT CCCCGGAATC ACGGAGCCGG
    TTAATCAGAG AAGAACTCCG ATAAAGAATG TGAAGAAGAA ACTTGACAGG
    AGAAGCAAAG CTAACGGATG GGTTAACACC GTCACTGAAA CTTTGTCCGA
    TCTCATCGCC AAAAAGCAGT GGTTACAAGC TCTCGAGGTA TTTCGATTTT
    CTCTCTTCTC GTTCATGTTT GATTGAATTT GAACTCAATT TTGAATCACG
    AAGTATAATT TAGCTGAAAG ATGATTTTGA TTGAATTGGG TATTTTGTTG
    ATGATCTTAG GTTTTTGATA TGTTGAGGGA ACAAACATTT TATCAACCAA
    AGGAAGGAAC TTACATGAAG CTGCTTG

AT3G06430.1

Model type
Protein coding
Short Description
Tetratricopeptide repeat (TPR)-like superfamily protein
Computational Description
embryo defective 2750 (EMB2750); INVOLVED IN: pollen tube development, embryo development ending in seed dormancy; LOCATED IN: chloroplast; CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885); BEST Arabidopsis thaliana protein match is: Tetratricopeptide repeat (TPR)-like superfamily protein (TAIR:AT3G53170.1); Has 31867 Blast hits to 12007 proteins in 283 species: Archae - 3; Bacteria - 31; Metazoa - 288; Fungi - 376; Plants - 30037; Viruses - 0; Other Eukaryotes - 1132 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT3G06433.1

Model type
Pseudogene
Curator Summary
pseudogene of nodulin MtN3 family protein
Computational Description
pseudogene, expressed protein
Link
InterPro Scan - TAIR