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GT17757

CSHL Arabidopsis genetrap mutant lines

Original: GT17757

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Original: GT17757

Determination of insertion point(s)

  • 3 prime edge [+] show sequence

    1. Chromosome: 1; Position: 30223945 [Map]; Strand: c
      • AT1G80390.1 - [+] show detail - indole-3-acetic acid inducible 15
        Distance: -1243; Region: intergenic
      • AT1G80400.1 - [+] show detail - RING/U-box superfamily protein
        Distance: -1231; Region: intergenic
    Flanking Genome Sequence: GT17757 - 3-prime edge 
    GTTCCGGTAT ATCCCGTTTT CGTTTCCGTC CCGCAAGTTA AATATGAAAA 
    TGAAAACGGT AGAGGTATTT TACCGACCGT TACCGACCGT TTTCATCCCT 
    AAATGAGATG TCAAAAAAGT TTAGACAAAG GAAAAGAGCA GAACATTAAT 
    TACAGCAGCG TAGGGTCACA TGCGTAAGTC ACGTGACTCT GTTTTTCGTT 
    GGGGAACATA GAATCATAAA TGATTTTTTC GATGGTTCAC GACACTATTC 
    TTAGACCAAT AAGGGCAATA AGAGTTAAAC CAGGGGCTAA TAGGTCCTAC 
    TGGCGACACA TAGACGAATT TACCGGTTTC GATTACAAAC CC

  • 3 prime edge [+] show sequence

    1. Chromosome: 1; Position: 30224099 [Map]; Strand: c
      • AT1G80390.1 - [+] show detail - indole-3-acetic acid inducible 15
        Distance: -1397; Region: intergenic
      • AT1G80400.1 - [+] show detail - RING/U-box superfamily protein
        Distance: -1077; Region: intergenic
    Flanking Genome Sequence: GT17757 - 3-prime edge 
    GCAGCGTAAG GTCACATGCG TAAGTCACGT GACTCTGTTT TTCGTTGGGG 
    AACATAGAAT CATAAATGAT TTTTTCGATG GTTCACGACA CTATTCTTAG 
    ACCAATAAGG GCAATAAGAG TTAAACCAGG GGCTAATAGG TCCTACTGGC 
    GACACATAGA CGAATTTACC GGTTTCGATT ACAAACCCGT GACCGGTAAT 
    TCCGGTCAGC CATTGTTTTC TAAGTTTGTT TTCTTTCGTT ATAATGCGCA 
    TGGAATGAAA C

AT1G80390.1

Model type
Protein coding
Short Description
indole-3-acetic acid inducible 15
Curator Summary
Member of a multigene family of Auxin responsive genes.
Computational Description
indole-3-acetic acid inducible 15 (IAA15); FUNCTIONS IN: sequence-specific DNA binding transcription factor activity; INVOLVED IN: response to auxin stimulus, regulation of transcription; LOCATED IN: nucleus; CONTAINS InterPro DOMAIN/s: Aux/IAA-ARF-dimerisation (InterPro:IPR011525), AUX/IAA protein (InterPro:IPR003311); BEST Arabidopsis thaliana protein match is: indole-3-acetic acid inducible 14 (TAIR:AT4G14550.1); Has 1649 Blast hits to 1649 proteins in 74 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 1649; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT1G80400.1

Model type
Protein coding
Short Description
RING/U-box superfamily protein
Computational Description
RING/U-box superfamily protein; FUNCTIONS IN: zinc ion binding; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, RING-type (InterPro:IPR001841), Zinc finger, C3HC4 RING-type (InterPro:IPR018957); BEST Arabidopsis thaliana protein match is: RING/U-box superfamily protein (TAIR:AT4G26580.2); Has 10084 Blast hits to 10056 proteins in 295 species: Archae - 0; Bacteria - 8; Metazoa - 2540; Fungi - 826; Plants - 5176; Viruses - 44; Other Eukaryotes - 1490 (source: NCBI BLink).
Link
InterPro Scan - TAIR