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GT17761

CSHL Arabidopsis genetrap mutant lines

Original: GT17761

Phenotypes

Morphological phenotypes

Original description

  • semi-sterile (unconfirmed)
Anatomical entity
/structure development stage		 Phenotypes
seed (PO:0009010)
  • present in fewer numbers in organism (PATO:0001997)

Original: GT17761

Determination of insertion point(s)

  • 3 prime edge [+] show sequence

    1. Chromosome: 5; Position: 11190394 [Map]; Strand: w
      • AT5G29550.1 - [+] show detail - transposable element gene
        Distance: -5880; Region: intergenic
      • AT5G29560.1 - [+] show detail - caleosin-related family protein
        Distance: 149; Region: intergenic
    Flanking Genome Sequence: GT17761 - 3-prime edge 
    GTAGAGGTAT TTTACCGACC GTTACCGACC GTTTTCATCC CTAGTTATAT 
    TGTTCTTTTA GTTGCTAAAT TTAGATGACT CCTTTGCTTG AGGGATATCA 
    TACAAGATGC TGAATGTGTC ACCATGTTAT ATGTCTTACG ATATTTTAAG 
    AGACGGAAGC CTTGTTTGTT TCATCATCTG GCATTTCCAT CCAAATGATC 
    TATCTAAATG TTCCATCTAA ATGCTTCATC TGAATGTTGT TCGTTTTAAT 
    TTTTGGATAT TCATTTGGAT GGATCATCTC AATAAATTTT TGTTTGTTTG 
    CTTAATTTAT ATAAATCTTC AT

  • 5 prime edge [+] show sequence

    1. Chromosome: 5; Position: 11190488 [Map]; Strand: w
      • AT5G29550.1 - [+] show detail - transposable element gene
        Distance: -5974; Region: intergenic
      • AT5G29560.1 - [+] show detail - caleosin-related family protein
        Distance: 55; Region: intergenic
    Flanking Genome Sequence: GT17761 - 5-prime edge 
    TAAGAAGCAA AACATTACGA TCTGAATTTA TATGATCTAA TGCGTGCTTT 
    GATTAAGAGA CTCGATAAAG GTTACTTAAG ACATTTAACT GCATAGAGAG 
    TAAGAAACCC GTACGTGTGT CATCCATCAT TCAGTCTTTT TAGTCGAAGC 
    TCTCGCCTTG GCGCAGTAGT CGAACAAGCT CCCGTCAAAG CATCTCCTGA 
    CCGCTTCTTT CGATAAGTGA CCATTCTCGT CTTTGGCAAG GAAGTAGAGT 
    ACTCCCCACT TCATCTCACT CGA

AT5G29550.1

Model type
Transposable element gene
Short Description
transposable element gene
Computational Description
gypsy-like retrotransposon family (Athila), has a 7.4e-126 P-value blast match to GB:CAA57397 Athila ORF 1 (Arabidopsis thaliana)
Link
InterPro Scan - TAIR

AT5G29560.1

Model type
Protein coding
Short Description
caleosin-related family protein
Computational Description
caleosin-related family protein; CONTAINS InterPro DOMAIN/s: EF-HAND 2 (InterPro:IPR018249), Caleosin related (InterPro:IPR007736); BEST Arabidopsis thaliana protein match is: ARABIDOPSIS THALIANA PEROXYGENASE 2 (TAIR:AT5G55240.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Link
InterPro Scan - TAIR