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GT17776

CSHL Arabidopsis genetrap mutant lines

Original: GT17776

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Original: GT17776

Determination of insertion point(s)

  • 3 prime edge [+] show sequence

    1. Chromosome: 3; Position: 22767153 [Map]; Strand: c
      • AT3G61510.1 - [+] show detail - ACC synthase 1
        Distance: -1423; Region: intergenic
      • AT3G61520.1 - [+] show detail - Pentatricopeptide repeat (PPR) superfamily protein
        Distance: 1764; Region: intergenic
    Flanking Genome Sequence: GT17776 - 3-prime edge
    GGTAGAGGTA TTTTACCGAC CGTTACCGAC CGTTTTCATC CCTATACAAA 
    CATTCTACCC GACCGGATCG TATCGGTATA TTCATCTCAC TCGACTAAAG
    TAGCTCGTCA GCTCACCCTT CTCAAGTAGC TCGTCCGTCT CAAGTCGCTT
    GTCTCGCCCT TCTCAAGTAG CTCGTCCGTC TAAAGTAGCT TGTCAGCTCG
    CCCTTCTCAA GAAGCTCGTT AGCTCGCTCC TCATCGCCAA ACTCTTCAGC
    TCGCCTTTAA GCTCTTCAAG CTCCTCGGCT CGTCCTCAAG CTCCTCAGCT
    CGTCATCAAG CTCCTCAGCT CGTCTTCAAG CTCTTCCCAT CACTCAGCGA
    CCATCTCCTC GCCTAGCTGT CAGCTAGTCA GATCGTCCAA CTCGTCTAGC
    TATCAGCTCA TCCCTCGACT GCAAAACTCA TCTACCTCCT CGCCTAGCGG
    CAGTTCGTCC ATTGACTGCA TAGTCCACCT ATCTCGTCGC CCAGCTCGTC
    TACACCTTCA GCAAACAACT CGGTTTGTCC AACTCGTCTC TCTTCCACGG
    TTC
  • 5 prime edge [+] show sequence

    1. Chromosome: 3; Position: 22767113 [Map]; Strand: c
      • AT3G61510.1 - [+] show detail - ACC synthase 1
        Distance: -1383; Region: intergenic
      • AT3G61520.1 - [+] show detail - Pentatricopeptide repeat (PPR) superfamily protein
        Distance: 1804; Region: intergenic
    Flanking Genome Sequence: GT17776 - 5-prime edge
    AGACATGCTA TTCGGTATTT ATAGCACTAT GCGTGTAGGA CATTCATCGA 
    GGGATTTGAC GAAACTACCC TTCGCCTTAA TACTCCTTGG TTTGGAACTT
    ATTTTGGGTT TTTGACTTGG GTTTGGGCAT TGGGCCAAGT AGGCCCAATC
    CGACCCCTAA CAACTGTACG TGCGTATACG TATTCTTTTT CCCTACAAAT
    ACACTCTAAG AAAACGAGTA ATCACTCCAC TTAGATACAT ACAGCGTGTC
    CATCTAGTTT TAGTCTTTTC GATCTCCGAC CAATTCAATC TAAGGCAAAG
    ATTAATGTAG AGAGAGTTTT ACTATGTCGT AAATCTAGAA AGCCGCCCAA
    AAAGATCTTT GATCGCCAAT TCAGTGGGCT GCTCCACGTG TCAATACTTT
    TTCACATGTT AATTTTGTTG GATTACTATA AACATAATGA ATGACCTTGA
    AGAACTCTTT GGAGCTAAAC CCAACGACCA ACCCATTACG GCATTACCAT
    TCTCTCTACA TGATTTTCTT CCTCTTAAAC TAATTTAAAA TGGAGAAAGA
    CAAAATTTGA AATTTTATTT TCACGTGATT AGACCATGAT TA

AT3G61510.1

Model type
Protein coding
Short Description
ACC synthase 1
Curator Summary
Encodes a member of the 1-aminocyclopropane-1-carboxylate (ACC) synthase (S-adenosyl-L-methionine methylthioadenosine-lyase, EC 4.4.1.14) gene family. The gene is transcriptionally active but enzymatically inactive. The predicted amino-acid sequence of ACS1 is missing the highly conserved tripeptide, Thr-Asn-Pro (TNP), between Ile204 and Ser205. Introduction of TNP into ACS1 restores the ACS activity.
Computational Description
ACC synthase 1 (ACS1); CONTAINS InterPro DOMAIN/s: 1-aminocyclopropane-1-carboxylate synthase (InterPro:IPR001176), Pyridoxal phosphate-dependent transferase, major domain (InterPro:IPR015424), Aminotransferase, class I/classII (InterPro:IPR004839), Aminotransferases, class-I, pyridoxal-phosphate-binding site (InterPro:IPR004838), Pyridoxal phosphate-dependent transferase, major region, subdomain 1 (InterPro:IPR015421), Pyridoxal phosphate-dependent transferase, major region, subdomain 2 (InterPro:IPR015422); BEST Arabidopsis thaliana protein match is: 1-amino-cyclopropane-1-carboxylate synthase 2 (TAIR:AT1G01480.1); Has 22999 Blast hits to 22998 proteins in 2818 species: Archae - 808; Bacteria - 15898; Metazoa - 560; Fungi - 631; Plants - 1241; Viruses - 0; Other Eukaryotes - 3861 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT3G61520.1

Model type
Protein coding
Short Description
Pentatricopeptide repeat (PPR) superfamily protein
Computational Description
Pentatricopeptide repeat (PPR) superfamily protein; CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885); BEST Arabidopsis thaliana protein match is: Pentatricopeptide repeat (PPR) superfamily protein (TAIR:AT5G28460.1); Has 51879 Blast hits to 14395 proteins in 309 species: Archae - 5; Bacteria - 71; Metazoa - 859; Fungi - 887; Plants - 48189; Viruses - 0; Other Eukaryotes - 1868 (source: NCBI BLink).
Link
InterPro Scan - TAIR