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GT17799

CSHL Arabidopsis genetrap mutant lines

Original: GT17799

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Original: GT17799

Determination of insertion point(s)

  • 3 prime edge [+] show sequence

    1. Chromosome: 4; Position: 45225 [Map]; Strand: c
      • AT4G00120.1 - [+] show detail - basic helix-loop-helix (bHLH) DNA-binding superfamily protein
        Distance: -2028; Region: intergenic
      • AT4G00124.1 - [+] show detail - unknown protein; Has 30201 Blast hits to 17322 proteins in 780 species: Archa...
        Distance: 50; Region: intergenic
    Flanking Genome Sequence: GT17799 - 3-prime edge 
    CGGTAGAGGT ATTTTACCGA CCGTTACCGA CCGTTTTCAT CCCTAACGAT 
    AAATGACTTC TTCAACGTTC TCTTTATGAT TTTTGGTGTC AATTTCTAGT 
    TCTTAAGTTG TTTTATTTGA CGATTTAACA GGATCTCTCC CCCATAACTC 
    ATTACACGAA GTGGGGACGG CTTCTTTCGA CATTAAGGTA TTGCCCATTG 
    TTTAAATTCT CAAGTGGATA AGTAAACTTA TAATCACCAC TAATTATATA 
    TATAAGTATA TTACTAATTA ATCGGTCTAA TTAAGATACC GTCTAAATGT 
    CGTTGTCCAC ATGAAATTTC ATATGTTGC

AT4G00120.1

Model type
Protein coding
Short Description
basic helix-loop-helix (bHLH) DNA-binding superfamily protein
Computational Description
INDEHISCENT (IND); FUNCTIONS IN: DNA binding, sequence-specific DNA binding transcription factor activity; INVOLVED IN: polar nucleus fusion, regulation of transcription; LOCATED IN: nucleus; CONTAINS InterPro DOMAIN/s: Helix-loop-helix DNA-binding domain (InterPro:IPR001092), Helix-loop-helix DNA-binding (InterPro:IPR011598); BEST Arabidopsis thaliana protein match is: basic helix-loop-helix (bHLH) DNA-binding superfamily protein (TAIR:AT5G09750.1); Has 2280 Blast hits to 2276 proteins in 91 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 2280; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT4G00124.1

Model type
Protein coding
Computational Description
unknown protein; Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Link
InterPro Scan - TAIR