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GT17800

CSHL Arabidopsis genetrap mutant lines

Original: GT17800

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Original: GT17800

Determination of insertion point(s)

Notice

More than one insertion position or no insertion point is expected.

  • 3 prime edge [+] show sequence

    1. Chromosome: 3; Position: 328243 [Map]; Strand: w
      • AT3G01970.1 - [+] show detail - WRKY DNA-binding protein 45
        Distance: -831; Region: promoter
      • AT3G01980.1 - [+] show detail - NAD(P)-binding Rossmann-fold superfamily protein
        Distance: 0; Region: exon3 (CDS)
      • AT3G01980.3 - [+] show detail - NAD(P)-binding Rossmann-fold superfamily protein
        Distance: 0; Region: exon2 (CDS)
      • AT3G01980.4 - [+] show detail - NAD(P)-binding Rossmann-fold superfamily protein
        Distance: 0; Region: exon4 (CDS)
      • AT3G01980.2 - [+] show detail - NAD(P)-binding Rossmann-fold superfamily protein
        Distance: 0; Region: exon2 (CDS)
    Flanking Genome Sequence: GT17800 - 3-prime edge
    AAACACCACT AAATATATAT ATAAGAATAT CACTAATTCA TGGGTCTAAT 
    TAAAAGACCG ACTAAATGTG ATTAACGACA AGAAATTACG AGGTGTCGCG
    GTCATCATCA CTCAACAACA ACAGCGGAGA GAGGGCGCTT TACCCTGGCG
    CTGATAGCCT ACGCTTCAAC TTCTGCCGCT ATATCACCAG CTCGTCCGGG
    TATGCATCCT AGCTCCTAAT TAGACACATC GCGTTCGTAA CTTGAATATG
    TTTGTTGATG ATTGGGTTTC AGGCATCAGC CATGAGTCTC GGGAAGCACA
    AGATACGGGT CAACATGATC TCTAGAGGGC TGCATCTGGA TGATGAGTAT
    ACAGCTTCTG TGGGAAGAGA CCGAGCGCAG AAGCTGGTCA AGGACGCTGC
    ACCCCTCGGC CAGTGGCTCA ACCCGGACAC AGACCTCTAC TCCACTGTTA
    TCTACTTGAT CAGCGATGGC TCACGCTT
  • 5 prime edge [+] show sequence

    1. Chromosome: 3; Position: 328537 [Map]; Strand: w
      • AT3G01980.1 - [+] show detail - NAD(P)-binding Rossmann-fold superfamily protein
        Distance: 0; Region: exon2 (CDS)
      • AT3G01980.3 - [+] show detail - NAD(P)-binding Rossmann-fold superfamily protein
        Distance: 0; Region: exon2 (CDS)
      • AT3G01980.4 - [+] show detail - NAD(P)-binding Rossmann-fold superfamily protein
        Distance: 0; Region: exon3 (CDS)
      • AT3G01980.2 - [+] show detail - NAD(P)-binding Rossmann-fold superfamily protein
        Distance: 0; Region: exon2 (CDS)
    Flanking Genome Sequence: GT17800 - 5-prime edge
    CCTACTTTCT CAAGGACAGC GGCATGAAAA GCAACTTCAG AGTCAGATTC 
    CATGTCGAGT GCTATAACAT CGGCAGGGAA GGCTCCCTCA ATGGAATCTC
    TAATCTTGTC TACAATGCTC CTTAGGGAAC CCTCATTTCC CATCATTACC
    AACCTAGCAA CAGTACATTG CATTTTTTGA AGGTTAACTA TAGACACCAA
    AGTCAACCAC AACACAAATC GGGGCTAGAA GAAGAAACAC AGGATAGGAG
    GAAAGAAGAC AAAATGAGAG ACTCACTTGC AACCGTGTTT GGCTAGATGG
    AAAGCGATGT TCCGGGACAC CTCGTCGCCG TTGGATGTCA TCAACACTCT
    CTTCGCCGGA TTTTCCATTT TGCCAAAGTA ACTCTTTATA AAACAATTCA
    GCAGATTCAA CAAGACTTAA GGGAGGGAGG GAGTGAGATT GATTCGATCG
    CCAATTCTAA ATAACTATAA AGAGTGGCTG CAAAAGCTCT TACCGGAACT
    GTGTCTGTGT GTTACCAAAA CGGCGAAACA AAGCAAATAA TTAATGCCTA
    ACCACATGAT CCACCACGTT CTGTTGTTAC CTTCTTTAAT TTGTAGATAG
    AAGAAGATGG TGATTGATAA CGGAGATGTA TTTTTTTCTT TAATAAAAAG
    CCCACTTCAA GGCCCAGATC CATTTCTGTA CTTTGTAGGT TTTCCAACTT
    TCCCGGCGCC GGAAGCAAGC GTAAGTTATC ACTGTTCCCC AACCAAATTC
    CATCATATCC TATTATCCTA CTACTAATGG ATC

AT3G01970.1

Model type
Protein coding
Short Description
WRKY DNA-binding protein 45
Curator Summary
member of WRKY Transcription Factor; Group I
Computational Description
WRKY DNA-binding protein 45 (WRKY45); CONTAINS InterPro DOMAIN/s: DNA-binding WRKY (InterPro:IPR003657); BEST Arabidopsis thaliana protein match is: WRKY DNA-binding protein 75 (TAIR:AT5G13080.1); Has 3497 Blast hits to 3049 proteins in 189 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 3482; Viruses - 0; Other Eukaryotes - 15 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT3G01980.1

Model type
Protein coding
Short Description
NAD(P)-binding Rossmann-fold superfamily protein
Computational Description
NAD(P)-binding Rossmann-fold superfamily protein; FUNCTIONS IN: oxidoreductase activity, binding, catalytic activity; INVOLVED IN: metabolic process; LOCATED IN: peroxisome; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: NAD(P)-binding domain (InterPro:IPR016040), Short-chain dehydrogenase/reductase SDR (InterPro:IPR002198); BEST Arabidopsis thaliana protein match is: NAD(P)-binding Rossmann-fold superfamily protein (TAIR:AT3G55290.2); Has 52487 Blast hits to 52467 proteins in 3078 species: Archae - 436; Bacteria - 38325; Metazoa - 1234; Fungi - 2083; Plants - 1279; Viruses - 0; Other Eukaryotes - 9130 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT3G01980.2

Model type
Protein coding
Short Description
NAD(P)-binding Rossmann-fold superfamily protein
Computational Description
NAD(P)-binding Rossmann-fold superfamily protein; FUNCTIONS IN: oxidoreductase activity, binding, catalytic activity; INVOLVED IN: metabolic process; LOCATED IN: peroxisome; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: NAD(P)-binding domain (InterPro:IPR016040), Short-chain dehydrogenase/reductase SDR (InterPro:IPR002198); BEST Arabidopsis thaliana protein match is: NAD(P)-binding Rossmann-fold superfamily protein (TAIR:AT3G46170.1); Has 521 Blast hits to 521 proteins in 203 species: Archae - 4; Bacteria - 319; Metazoa - 7; Fungi - 24; Plants - 123; Viruses - 0; Other Eukaryotes - 44 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT3G01980.3

Model type
Protein coding
Short Description
NAD(P)-binding Rossmann-fold superfamily protein
Computational Description
NAD(P)-binding Rossmann-fold superfamily protein; FUNCTIONS IN: oxidoreductase activity, binding, catalytic activity; INVOLVED IN: metabolic process; LOCATED IN: peroxisome; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: NAD(P)-binding domain (InterPro:IPR016040), Short-chain dehydrogenase/reductase SDR (InterPro:IPR002198); BEST Arabidopsis thaliana protein match is: NAD(P)-binding Rossmann-fold superfamily protein (TAIR:AT3G55290.1); Has 42855 Blast hits to 42845 proteins in 2927 species: Archae - 336; Bacteria - 31027; Metazoa - 1001; Fungi - 1707; Plants - 1092; Viruses - 0; Other Eukaryotes - 7692 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT3G01980.4

Model type
Protein coding
Short Description
NAD(P)-binding Rossmann-fold superfamily protein
Computational Description
NAD(P)-binding Rossmann-fold superfamily protein; FUNCTIONS IN: oxidoreductase activity, binding, catalytic activity; INVOLVED IN: metabolic process; LOCATED IN: peroxisome; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: NAD(P)-binding domain (InterPro:IPR016040), Short-chain dehydrogenase/reductase SDR (InterPro:IPR002198); BEST Arabidopsis thaliana protein match is: NAD(P)-binding Rossmann-fold superfamily protein (TAIR:AT3G55290.2); Has 52487 Blast hits to 52467 proteins in 3078 species: Archae - 436; Bacteria - 38325; Metazoa - 1234; Fungi - 2083; Plants - 1279; Viruses - 0; Other Eukaryotes - 9130 (source: NCBI BLink).
Link
InterPro Scan - TAIR