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GT17822

CSHL Arabidopsis genetrap mutant lines

Original: GT17822

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Original: GT17822

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 3; Position: 16683027 [Map]; Strand: w
      • AT3G45470.1 - [+] show detail - IBR domain containing protein
        Distance: -1766; Region: intergenic
      • AT3G45480.1 - [+] show detail - RING/U-box protein with C6HC-type zinc finger
        Distance: 177; Region: intergenic
    Flanking Genome Sequence: GT17822 - 5-prime edge 
    TTATTTTTAA AATTCCCTTT CGGTTTTTGA CTTCGTTGTT TTTTTAGACT 
    TTTAAAATAT GCCTAAGAAA TAGTTAAATA ATTAATCATC CGAATATCAA 
    GTATAACCGA AAACGTAGCA TACGATTAGA AAAGATCTTA AAACTCTTAG 
    AATTAAAAAT AAAAAAGAGA TAAAAAGTGT TTCAAAACAA CAACTACTAA 
    TCTATGTGTT AATCAAAACA CATAGACTAA ACACCATACC AATCCATCTA 
    AATAGTCACG GGGAGAACAA ACACAACCAC AACCCTAGCT AAGTACTTAA 
    ACATTATCAG CTGTACTTAA CTATGAGCAT AAAACTAACA ACTAAAAGAC 
    TTACGAAAGC AAGAAAAATG AGCACTATTG CCACCCAATC CATCACCTCT 
    TGGAGATGAT GAGAGCAACA ACCTCCAAGC TTCCATTGAG CTCCACATGC 
    ATAGCAAAAC TTATAGCCAC ACCTACACAT CAACCACGAA CATTACAGTA 
    GCCCAAAACA TAATCCAATT CCAAATAGGA TTCGGAAATC ATAATGACTA 
    TAGAATTTGA TTATAGATAA TACCTGCAAG TTACAGGCAT GCGTTCTTCC 
    GATAGTTTTA TCTTGTGTAG GCAACTTCTA CATTGACGCC ACACTATTGT 
    AATAGGCTCA CGACCGGGAA CTCTTGTGTT CCTTG

AT3G45470.1

Model type
Protein coding
Short Description
IBR domain containing protein
Computational Description
IBR domain containing protein; FUNCTIONS IN: zinc ion binding; CONTAINS InterPro DOMAIN/s: Zinc finger, C6HC-type (InterPro:IPR002867), Zinc finger, RING-type (InterPro:IPR001841); BEST Arabidopsis thaliana protein match is: RING/U-box superfamily protein (TAIR:AT2G25360.1); Has 2895 Blast hits to 2887 proteins in 217 species: Archae - 0; Bacteria - 0; Metazoa - 1211; Fungi - 626; Plants - 637; Viruses - 2; Other Eukaryotes - 419 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT3G45480.1

Model type
Protein coding
Short Description
RING/U-box protein with C6HC-type zinc finger
Computational Description
RING/U-box protein with C6HC-type zinc finger; FUNCTIONS IN: zinc ion binding; EXPRESSED IN: sepal; EXPRESSED DURING: petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Zinc finger, RING-type, conserved site (InterPro:IPR017907), Zinc finger, C6HC-type (InterPro:IPR002867); BEST Arabidopsis thaliana protein match is: IBR domain containing protein (TAIR:AT3G45460.1); Has 2300 Blast hits to 2269 proteins in 201 species: Archae - 0; Bacteria - 0; Metazoa - 900; Fungi - 395; Plants - 659; Viruses - 0; Other Eukaryotes - 346 (source: NCBI BLink).
Link
InterPro Scan - TAIR