Home
Mutant Lines
GT17835

GT17835

CSHL Arabidopsis genetrap mutant lines

Phenotypes

Morphological phenotypes

Original description

semi-sterile (unconfirmed)

Anatomical entity /structure development stage	Phenotypes
seed (PO:0009010)	present in fewer numbers in organism (PATO:0001997)

Original: GT17835

Determination of insertion point(s)

3 prime edge [+] show sequence
1. Chromosome: 4; Position: 227521 [Map]; Strand: w
  - AT4G00500.1 - [+] show detail - alpha/beta-Hydrolases superfamily protein
    Distance: -125; Region: promoter
  - AT4G00500.2 - [+] show detail - alpha/beta-Hydrolases superfamily protein
    Distance: -326; Region: promoter
  - AT4G00520.2 - [+] show detail - Acyl-CoA thioesterase family protein
    Distance: -173; Region: promoter
  - AT4G00520.3 - [+] show detail - Acyl-CoA thioesterase family protein
    Distance: -173; Region: promoter
Flanking Genome Sequence: GT17835 - 3-prime edge
```
ACAAATTTCA TGGGCCTATA GCTAAAACCC CAAATTTGGT GGTCCTAAAT 
CCTAATACGC TGTCCTATAA AAAACAAAAG TTTCAT
```
3 prime edge [+] show sequence
1. Chromosome: 4; Position: 227709 [Map]; Strand: w
  - AT4G00500.1 - [+] show detail - alpha/beta-Hydrolases superfamily protein
    Distance: -313; Region: promoter
  - AT4G00500.2 - [+] show detail - alpha/beta-Hydrolases superfamily protein
    Distance: -514; Region: promoter
  - AT4G00520.2 - [+] show detail - Acyl-CoA thioesterase family protein
    Distance: 0; Region: exon1 (5UTR)
  - AT4G00520.3 - [+] show detail - Acyl-CoA thioesterase family protein
    Distance: 0; Region: exon1 (5UTR)
Flanking Genome Sequence: GT17835 - 3-prime edge
```
TTTTACCGAC CGTTACCGAC CGTTTTCTCC ATGCATGACG GTGTAGAGAC 
TGTCGAAACG TTGGCCGGCA AATTCAATCA TTCAACTAAA AATCTGCTGA 
CCAAACAAAT AAAAAATGCA ACGAGGTAAT TATCCAGTAC CCTTGGGTAT 
ACGATAGAGT CTGTGGACAC CGCTCAGATG CAGTGCTGAC AAATTTAATG 
GGCCTATAGC TAAAAGCCCA AATTTGTTGG TCCTAAATCC TAATACGCTG 
TCCTATAGAA AACAAAAGTT TCATCTCACT CGACC
```
5 prime edge [+] show sequence
1. Chromosome: 4; Position: 227782 [Map]; Strand: w
  - AT4G00500.1 - [+] show detail - alpha/beta-Hydrolases superfamily protein
    Distance: -386; Region: promoter
  - AT4G00500.2 - [+] show detail - alpha/beta-Hydrolases superfamily protein
    Distance: -587; Region: promoter
  - AT4G00520.2 - [+] show detail - Acyl-CoA thioesterase family protein
    Distance: 0; Region: intron1 (CDS)
  - AT4G00520.3 - [+] show detail - Acyl-CoA thioesterase family protein
    Distance: 0; Region: intron1 (CDS)
Flanking Genome Sequence: GT17835 - 5-prime edge
```
CTTTCTCCCT GCCGTCTGAA CACTGAATCA GGTAATTCCG ATATCTTTTT 
TCTTTGTTCT ATCGCCGGAG AAATGAAAGA GATGTTGAAC TGAGAGTTTT 
TCCAAGATTC GGATGATTTT TCATATGATT GGTTGCTTTG GTTTTGTAGT 
TGTGGAGTTC CTTGGGAATG TGACCTTGTT GCAGCGATTA CCTAGTTCTT 
CTTTGAAGAG AATAGCTGAA GTTGTTCTCT TCAAACGTTA TGGTCAGTGA 
TTCTGGGATT TTGCTTTTG
```

AT4G00500.1

Model type: Protein coding
Short Description: alpha/beta-Hydrolases superfamily protein
Computational Description: alpha/beta-Hydrolases superfamily protein; FUNCTIONS IN: triglyceride lipase activity, calmodulin binding; INVOLVED IN: lipid catabolic process, lipid metabolic process; LOCATED IN: endomembrane system; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 9 growth stages; CONTAINS InterPro DOMAIN/s: Lipase, class 3 (InterPro:IPR002921), Mono-/di-acylglycerol lipase, N-terminal (InterPro:IPR005592); BEST Arabidopsis thaliana protein match is: alpha/beta-Hydrolases superfamily protein (TAIR:AT3G49050.1); Has 561 Blast hits to 561 proteins in 134 species: Archae - 0; Bacteria - 2; Metazoa - 171; Fungi - 76; Plants - 213; Viruses - 0; Other Eukaryotes - 99 (source: NCBI BLink).
Link: InterPro Scan - TAIR

AT4G00500.2

Model type: Protein coding
Short Description: alpha/beta-Hydrolases superfamily protein
Computational Description: alpha/beta-Hydrolases superfamily protein; FUNCTIONS IN: triglyceride lipase activity, calmodulin binding; INVOLVED IN: lipid catabolic process, lipid metabolic process; LOCATED IN: endomembrane system; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 9 growth stages; CONTAINS InterPro DOMAIN/s: Lipase, class 3 (InterPro:IPR002921), Mono-/di-acylglycerol lipase, N-terminal (InterPro:IPR005592); BEST Arabidopsis thaliana protein match is: alpha/beta-Hydrolases superfamily protein (TAIR:AT3G49050.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).
Link: InterPro Scan - TAIR

AT4G00520.2

Model type: Protein coding
Short Description: Acyl-CoA thioesterase family protein
Computational Description: Acyl-CoA thioesterase family protein; FUNCTIONS IN: acyl-CoA thioesterase activity; INVOLVED IN: acyl-CoA metabolic process; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Cyclic nucleotide-binding (InterPro:IPR000595), Cyclic nucleotide-binding-like (InterPro:IPR018490), Acyl-CoA thioesterase (InterPro:IPR003703), RmlC-like jelly roll fold (InterPro:IPR014710); BEST Arabidopsis thaliana protein match is: Acyl-CoA thioesterase family protein (TAIR:AT1G01710.1); Has 3429 Blast hits to 3402 proteins in 976 species: Archae - 0; Bacteria - 1910; Metazoa - 393; Fungi - 300; Plants - 65; Viruses - 0; Other Eukaryotes - 761 (source: NCBI BLink).
Link: InterPro Scan - TAIR

AT4G00520.3

Model type: Protein coding
Short Description: Acyl-CoA thioesterase family protein
Computational Description: Acyl-CoA thioesterase family protein; FUNCTIONS IN: acyl-CoA thioesterase activity; INVOLVED IN: acyl-CoA metabolic process; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Cyclic nucleotide-binding (InterPro:IPR000595), Cyclic nucleotide-binding-like (InterPro:IPR018490), Acyl-CoA thioesterase (InterPro:IPR003703), RmlC-like jelly roll fold (InterPro:IPR014710); BEST Arabidopsis thaliana protein match is: Acyl-CoA thioesterase family protein (TAIR:AT1G01710.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Link: InterPro Scan - TAIR