1. Home
  2. Mutant Lines
  3. GT17838

GT17838

CSHL Arabidopsis genetrap mutant lines

Original: GT17838

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Original: GT17838

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 3; Position: 2328295 [Map]; Strand: c
      • AT3G07300.1 - [+] show detail - NagB/RpiA/CoA transferase-like superfamily protein
        Distance: -681; Region: promoter
      • AT3G07300.2 - [+] show detail - NagB/RpiA/CoA transferase-like superfamily protein
        Distance: -671; Region: promoter
      • AT3G07300.3 - [+] show detail - NagB/RpiA/CoA transferase-like superfamily protein
        Distance: -670; Region: promoter
      • AT3G07310.1 - [+] show detail - Protein of unknown function (DUF760)
        Distance: 0; Region: exon2 (CDS)
    Flanking Genome Sequence: GT17838 - 5-prime edge 
    CTTTCTCCCT GTCCACAAGC AGCAGCTGAG ACATTACATC TCAGACTTTG 
    ATCCCGAGAC ATTGCAGAGA TGCGCAAAAC CAAGGACAGA GGAGGCAAGG 
    AATCTGATAG AGAAGCAAAG TTTGGCTCTT TTTGGCACGG AAGAGAGTGA 
    TGAGACCATA GTGACATCGT TTTCGAGTCT GAAGCGGTTG GTTCTCGAGG 
    CTGTGGCGTT TGGGACATTC CTGTGGGACA CGGAATTGTA TGTAGATGGT 
    GCATATAAGC TGAAGGAGAA TGGGAATGCA GAAGAACAAG AAGGAAAGAA 
    AAGCATATGA TGAACAAGTC TGGTTAGAAG AAAAGCTTCA TGATCTTCTG 
    GTAGTGTATA TATAGAGAAA TGTTTCTGCC GAATCTCTCA GGCAGTTGTT 
    CAGTTCAATG TATAGATCTT GCTTAGAAAT ATTTTGATTT CTGAATAAGA 
    ATGTGGTGTG GTTATAAGGA ATAAGAGATA CTGTAGTTGG GTTCAATTTT 
    ATGTTATGTG TTAAGTTTCC TTGTTCAATT TGATCTTTCT CCTTTTGTCA 
    AAAGACTCAA AACCTCAAAA ACAAAACTAA AATTTGGGTC CCAAAGAAGC 
    TATGCAAAGG GAAGGAGATA CTTTGATAAT GCTTTTATTT TTGGGCTTAT 
    TTTAGGCCCA AATAGCACCT TATTTCGGCC CAAAAGTTAG ACCTACCAAA 
    AAACCTTCAA TTGTCACTAG AGCGAATGAA TGTAAAAAGC TGGTCTCCTA 
    TTATCAATTC CGTTTCTCTC T

AT3G07300.1

Model type
Protein coding
Short Description
NagB/RpiA/CoA transferase-like superfamily protein
Computational Description
NagB/RpiA/CoA transferase-like superfamily protein; FUNCTIONS IN: GTP binding, translation initiation factor activity; INVOLVED IN: translational initiation, cellular metabolic process; LOCATED IN: eukaryotic translation initiation factor 2B complex; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Initiation factor 2B related (InterPro:IPR000649); BEST Arabidopsis thaliana protein match is: NagB/RpiA/CoA transferase-like superfamily protein (TAIR:AT2G44070.1); Has 4448 Blast hits to 4435 proteins in 1032 species: Archae - 365; Bacteria - 1744; Metazoa - 543; Fungi - 515; Plants - 227; Viruses - 0; Other Eukaryotes - 1054 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT3G07300.2

Model type
Protein coding
Short Description
NagB/RpiA/CoA transferase-like superfamily protein
Computational Description
NagB/RpiA/CoA transferase-like superfamily protein; FUNCTIONS IN: GTP binding, translation initiation factor activity; INVOLVED IN: translational initiation, cellular metabolic process; LOCATED IN: eukaryotic translation initiation factor 2B complex; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Initiation factor 2B related (InterPro:IPR000649); BEST Arabidopsis thaliana protein match is: NagB/RpiA/CoA transferase-like superfamily protein (TAIR:AT2G44070.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT3G07300.3

Model type
Protein coding
Short Description
NagB/RpiA/CoA transferase-like superfamily protein
Computational Description
NagB/RpiA/CoA transferase-like superfamily protein; FUNCTIONS IN: GTP binding, translation initiation factor activity; INVOLVED IN: translational initiation, cellular metabolic process; LOCATED IN: eukaryotic translation initiation factor 2B complex; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Initiation factor 2B related (InterPro:IPR000649); BEST Arabidopsis thaliana protein match is: NagB/RpiA/CoA transferase-like superfamily protein (TAIR:AT2G44070.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT3G07310.1

Model type
Protein coding
Short Description
Protein of unknown function (DUF760)
Computational Description
Protein of unknown function (DUF760); CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF760 (InterPro:IPR008479); BEST Arabidopsis thaliana protein match is: Protein of unknown function (DUF760) (TAIR:AT5G48590.1); Has 147 Blast hits to 143 proteins in 27 species: Archae - 0; Bacteria - 10; Metazoa - 0; Fungi - 0; Plants - 134; Viruses - 0; Other Eukaryotes - 3 (source: NCBI BLink).
Link
InterPro Scan - TAIR